Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3318

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3317: 11685 - SUPERFAMILY--SSF52540, at 381412 to 382785 11685 mRNA_3318: 11686 - K14640 SLC20A, PIT solute carrier family 20 (sodium-dependent phosphate transporter), at 383705 to 386213 11686 mRNA_3319: 11687 - KOG3854 SPRT-like metalloprotease, at 386428 to 389154 11687

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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382,739 - 0.0
383,029 + -0.0
383,161 - 1.4
383,190 + 1.0
383,311 - 1.4
383,460 - -0.3
383,467 + 2.3
383,471 - 1.0
383,471 + -0.4
383,476 - 0.1
383,483 + -0.2
383,484 - -0.3
383,487 - -0.4
383,490 + 0.8
383,498 + -1.1
383,510 - 1.1
383,522 + -1.4
383,574 + -0.3
383,672 + 1.7
383,679 + 0.4
383,688 - 0.3
383,701 - -1.7
383,743 + 0.0
383,778 + 1.2
383,815 - 0.9
383,836 + 1.8
383,972 - 11686 mRNA_3318 0.11 0.1
383,998 - 11686 mRNA_3318 0.12 -2.6
384,166 + 11686 mRNA_3318 0.18 1.5
384,410 - 11686 mRNA_3318 0.28 -0.9
384,739 + 11686 mRNA_3318 0.41 1.6
385,136 + 11686 mRNA_3318 0.57 -0.6
385,153 - 11686 mRNA_3318 0.58 -4.0
385,291 + 11686 mRNA_3318 0.63 -1.4
385,341 + 11686 mRNA_3318 0.65 0.2
385,545 - 11686 mRNA_3318 0.73 0.5
385,615 + 11686 mRNA_3318 0.76 0.1
385,755 + 11686 mRNA_3318 0.82 -2.6
385,932 - 11686 mRNA_3318 0.89 -1.0
385,997 + -1.0
386,084 + 0.5
386,446 + 0.7
386,461 + -0.9
386,477 - -1.0
387,070 + 11687 mRNA_3319 0.24 -1.5
387,091 + 11687 mRNA_3319 0.24 -0.7
387,183 - 11687 mRNA_3319 0.28 0.1
387,186 + 11687 mRNA_3319 0.28 -0.0