Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3308

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3307: 11675 - K06268 PPP3R, CNB serine/threonine-protein phosphatase 2B regulatory subunit, at 355687 to 356880 11675 mRNA_3308: 11676 - KOG2533 Permease of the major facilitator superfamily, at 357667 to 359935 11676 mRNA_3309: 11677 - HMMPfam-Amidohydrolase family-PF01979,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 360539 to 362421 11677

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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356,755 - 11675 mRNA_3307 0.89 3.2
356,888 - 5.6
356,897 - 4.0
356,904 - 2.1
356,914 + -0.4
356,915 - 5.0
357,040 + 2.9
357,044 - 1.9
357,074 + -0.5
357,192 + -1.0
357,196 - 0.8
357,204 + 0.7
357,343 - 0.8
357,790 + -0.0
358,233 - 11676 mRNA_3308 0.25 -0.3
358,271 + 11676 mRNA_3308 0.27 -0.8
358,712 + 11676 mRNA_3308 0.46 -0.1
359,243 - 11676 mRNA_3308 0.69 0.9
359,396 - 11676 mRNA_3308 0.76 -0.4
359,427 + 11676 mRNA_3308 0.78 0.0
359,430 - 11676 mRNA_3308 0.78 -0.6
359,848 + -0.1
359,853 - -0.1
359,857 - -0.1
360,014 - -1.6
360,017 + -1.8
360,057 - -1.8
360,103 + -0.6
360,115 - -0.2
360,117 - 0.2
360,132 + 0.4
360,136 - -0.4
360,136 + -0.1
360,136 - 1.1
360,140 - -2.2
360,143 - -0.7
360,147 + -0.9
360,153 + -0.0
360,164 + -1.2
360,165 - 1.0
360,169 - -2.0
360,170 - 1.1
360,182 + 0.6
360,182 + 0.3
360,197 + 0.6
360,203 - 0.2
360,217 + -1.4
360,356 + -0.4
360,370 - -0.2
360,371 + -0.7
360,378 + 0.7
360,395 - 0.0
360,398 + -0.8
360,413 + 1.5
360,426 - 1.9
360,426 - 0.2
360,427 - 1.8
360,428 + -2.6
360,428 - 1.5
360,432 - -0.1
360,433 - -1.3
360,434 - 1.5
360,437 + 1.1
360,437 - -4.3
360,437 - -0.2
360,440 + 0.8
360,446 + 0.7
360,447 - 0.3
360,448 - -0.6
360,454 - 0.8
360,461 + 1.0
360,463 - 1.4
360,466 - 0.3
360,471 + -0.4
360,471 + -3.5
360,475 - -0.1
360,486 + 0.1
360,489 + 2.9
360,507 + -0.8
360,563 - -0.4
360,608 - -0.8
360,609 - 0.9
360,612 - -0.5
360,637 - 2.3
360,751 - 11677 mRNA_3309 0.11 -1.1
360,763 + 11677 mRNA_3309 0.12 -0.6
360,911 + 11677 mRNA_3309 0.20 0.7