Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3307

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3306: 11674 - KOG0845 Nuclear pore complex, Nup98 component (sc Nup145/Nup100/Nup116), at 353822 to 355437 11674 mRNA_3307: 11675 - K06268 PPP3R, CNB serine/threonine-protein phosphatase 2B regulatory subunit, at 355687 to 356880 11675 mRNA_3308: 11676 - KOG2533 Permease of the major facilitator superfamily, at 357667 to 359935 11676

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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355,462 + 0.8
355,602 - 1.9
355,776 + 3.9
355,894 + 11675 mRNA_3307 0.17 4.1
356,031 + 11675 mRNA_3307 0.29 3.9
356,031 + 11675 mRNA_3307 0.29 4.3
356,052 + 11675 mRNA_3307 0.31 3.0
356,310 + 11675 mRNA_3307 0.52 2.5
356,615 - 11675 mRNA_3307 0.78 1.7
356,621 - 11675 mRNA_3307 0.78 3.1
356,623 - 11675 mRNA_3307 0.78 3.8
356,629 - 11675 mRNA_3307 0.79 4.5
356,755 - 11675 mRNA_3307 0.89 3.2
356,888 - 5.6
356,897 - 4.0
356,904 - 2.1
356,914 + -0.4
356,915 - 5.0
357,040 + 2.9
357,044 - 1.9
357,074 + -0.5
357,192 + -1.0
357,196 - 0.8
357,204 + 0.7
357,343 - 0.8
357,790 + -0.0