Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3297

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3296: 11664 - Interpro PPR repeat family, at 323054 to 326094 11664 mRNA_3297: 11665 - K11173 ADHFE1 hydroxyacid-oxoacid transhydrogenase, at 326501 to 328972 11665 mRNA_3298: 11666 - Hypothetical Protein, at 329367 to 333104 11666

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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325,888 + -3.4
326,148 - -0.4
326,151 - 1.6
326,162 + -0.2
326,163 + 0.8
326,163 - 0.5
326,172 - -0.8
326,176 + 0.4
326,340 - -0.6
326,348 + -0.9
326,357 - -0.2
326,360 + -0.7
326,367 + -1.5
326,367 + -0.9
326,386 + -0.9
326,507 - 1.1
326,647 + -0.3
326,787 + 11665 mRNA_3297 0.12 0.4
326,945 - 11665 mRNA_3297 0.18 0.8
326,951 + 11665 mRNA_3297 0.18 0.7
327,054 + 11665 mRNA_3297 0.22 -0.1
327,233 - 11665 mRNA_3297 0.30 -0.2
327,406 + 11665 mRNA_3297 0.37 -1.3
327,439 + 11665 mRNA_3297 0.38 0.2
327,534 + 11665 mRNA_3297 0.42 -0.7
327,546 - 11665 mRNA_3297 0.42 0.8
327,552 + 11665 mRNA_3297 0.43 -0.1
327,654 - 11665 mRNA_3297 0.47 -0.9
328,160 + 11665 mRNA_3297 0.67 1.3
328,710 + 11665 mRNA_3297 0.89 0.7
329,419 - -0.7