Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3255

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3254: 11622 - K12161 URM1 ubiquitin related modifier 1, at 220282 to 220812 11622 mRNA_3255: 11623 - K01711 gmd, GMDS GDPmannose 4,6-dehydratase, at 221213 to 223248 11623

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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220,728 + 11622 mRNA_3254 0.84 1.6
220,855 + 0.2
220,874 - 0.1
220,883 - -2.4
220,892 + 0.6
220,981 - -0.7
221,012 - 0.2
221,024 - 0.5
221,027 - -1.2
221,285 - -0.9
221,473 + 11623 mRNA_3255 0.13 1.0
221,873 - 11623 mRNA_3255 0.32 1.1
222,298 + 11623 mRNA_3255 0.53 1.3
222,308 - 11623 mRNA_3255 0.54 0.5
222,317 - 11623 mRNA_3255 0.54 1.6
222,333 - 11623 mRNA_3255 0.55 -0.7
222,342 - 11623 mRNA_3255 0.55 -0.1
222,434 - 11623 mRNA_3255 0.60 0.8
222,452 - 11623 mRNA_3255 0.61 -1.1
222,460 + 11623 mRNA_3255 0.61 0.8
222,729 + 11623 mRNA_3255 0.74 -0.4
222,824 - 11623 mRNA_3255 0.79 0.1
222,882 + 11623 mRNA_3255 0.82 2.5
222,994 + 11623 mRNA_3255 0.87 0.3
223,005 - 11623 mRNA_3255 0.88 -1.1
223,021 + 11623 mRNA_3255 0.89 2.6
223,038 + 11623 mRNA_3255 0.90 -1.4
223,038 + 11623 mRNA_3255 0.90 0.0
223,040 + 11623 mRNA_3255 0.90 2.5
223,148 - 1.0
223,162 - -0.8
223,169 - 1.1
223,172 + -0.4
223,321 + -1.0
223,326 + 0.3
223,328 - -1.6
223,343 + 0.4
223,346 - 0.7
223,352 - -0.5
223,361 + 1.0
223,477 - -0.7
223,491 - -1.7
223,494 - 1.0
223,495 - 0.4
223,801 - 0.3
223,956 + 0.4