Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3253

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3252: 11620 - KOG3348 BolA (bacterial stress-induced morphogen)-related protein, at 217348 to 218013 11620 mRNA_3253: 11621 - KOG1201 Hydroxysteroid 17-beta dehydrogenase 11, at 218422 to 220105 11621 mRNA_3254: 11622 - K12161 URM1 ubiquitin related modifier 1, at 220282 to 220812 11622

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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217,516 - 11620 mRNA_3252 0.25 -1.5
217,530 + 11620 mRNA_3252 0.27 -0.0
217,534 - 11620 mRNA_3252 0.28 -2.0
217,570 - 11620 mRNA_3252 0.33 -1.5
217,867 - 11620 mRNA_3252 0.78 -0.9
217,869 + 11620 mRNA_3252 0.78 -0.1
217,881 + 11620 mRNA_3252 0.80 0.4
217,939 - 11620 mRNA_3252 0.89 0.6
218,014 + 0.8
218,017 + 0.5
218,136 - 0.9
218,164 + 0.7
218,166 + -0.9
218,183 + -0.3
218,324 - 0.5
218,330 - 0.1
218,340 + 1.0
218,344 - 0.6
218,345 - 0.3
218,346 - -0.2
218,350 + -1.3
218,359 + -0.9
218,361 + -1.3
218,363 - 0.5
218,523 + -0.2
218,661 + 11621 mRNA_3253 0.14 1.2
218,802 - 11621 mRNA_3253 0.23 1.1
218,811 - 11621 mRNA_3253 0.23 0.9
218,821 + 11621 mRNA_3253 0.24 -0.4
218,965 - 11621 mRNA_3253 0.32 -0.1
218,969 + 11621 mRNA_3253 0.32 1.0
219,111 + 11621 mRNA_3253 0.41 -0.1
219,221 - 11621 mRNA_3253 0.47 1.4
219,378 - 11621 mRNA_3253 0.57 0.4
219,662 - 11621 mRNA_3253 0.74 1.3
219,840 - 11621 mRNA_3253 0.84 1.4
219,997 + -0.0
220,124 + 0.7
220,728 + 11622 mRNA_3254 0.84 1.6
220,855 + 0.2
220,874 - 0.1
220,883 - -2.4
220,892 + 0.6
220,981 - -0.7
221,012 - 0.2
221,024 - 0.5
221,027 - -1.2