Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3233

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3232: 11600 - ProSiteProfiles-BRCT domain profile.-PS50172, at 159953 to 161045 11600 mRNA_3233: 11601 - KOG1339 Aspartyl protease, at 161469 to 163797 11601 mRNA_3234: 11602 - Hypothetical Protein, at 163979 to 166240 11602

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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161,043 + -1.5
161,050 + -0.7
161,173 - 0.4
161,175 + 0.7
161,180 + 0.3
161,207 + 0.5
161,216 + 0.3
161,277 + -2.1
161,499 + -3.0
161,569 - 0.5
161,575 + -2.0
161,599 + 2.6
161,605 + -0.0
161,606 - -1.6
161,619 + -0.4
161,678 - -0.1
161,777 - 11601 mRNA_3233 0.13 0.5
161,794 - 11601 mRNA_3233 0.14 -1.7
162,056 + 11601 mRNA_3233 0.25 1.1
162,074 + 11601 mRNA_3233 0.26 0.0
162,101 - 11601 mRNA_3233 0.27 -0.1
162,189 - 11601 mRNA_3233 0.31 0.1
162,366 - 11601 mRNA_3233 0.39 2.1
162,676 - 11601 mRNA_3233 0.52 0.6
162,780 + 11601 mRNA_3233 0.56 -1.0
162,910 - 11601 mRNA_3233 0.62 2.0
162,937 - 11601 mRNA_3233 0.63 -2.4
162,973 + 11601 mRNA_3233 0.65 2.0
163,328 - 11601 mRNA_3233 0.80 0.9
163,399 + 11601 mRNA_3233 0.83 0.1
163,460 - 11601 mRNA_3233 0.85 -0.6
163,620 - -0.0
163,638 - 1.3
163,643 + -1.2
163,757 + -1.9
163,950 - 0.1
163,952 + 0.6
164,090 - 0.8
164,207 - 11602 mRNA_3234 0.10 0.2
164,330 - 11602 mRNA_3234 0.16 -0.8
164,520 + 11602 mRNA_3234 0.24 -1.0