Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3232

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3231: 11599 - KOG1430 C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases, at 157802 to 159637 11599 mRNA_3232: 11600 - ProSiteProfiles-BRCT domain profile.-PS50172, at 159953 to 161045 11600 mRNA_3233: 11601 - KOG1339 Aspartyl protease, at 161469 to 163797 11601

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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159,272 + 11599 mRNA_3231 0.80 -0.7
159,410 - 11599 mRNA_3231 0.88 0.0
159,517 - 1.0
159,523 - -0.9
159,685 + 0.5
159,730 - -0.4
159,843 + -0.1
159,847 - 0.7
159,855 + 1.3
159,860 - 0.3
159,951 + -1.0
159,987 - 0.2
159,999 - 0.3
160,004 - 1.8
160,152 - 11600 mRNA_3232 0.18 1.6
160,305 + 11600 mRNA_3232 0.32 1.2
161,043 + -1.5
161,050 + -0.7
161,173 - 0.4
161,175 + 0.7
161,180 + 0.3
161,207 + 0.5
161,216 + 0.3
161,277 + -2.1
161,499 + -3.0
161,569 - 0.5
161,575 + -2.0
161,599 + 2.6
161,605 + -0.0
161,606 - -1.6
161,619 + -0.4
161,678 - -0.1
161,777 - 11601 mRNA_3233 0.13 0.5
161,794 - 11601 mRNA_3233 0.14 -1.7