Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3229

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3228: 11596 - Hypothetical Protein, at 150554 to 152280 11596 mRNA_3229: 11597 - K01113 phoD alkaline phosphatase D, at 152510 to 154539 11597 mRNA_3230: 11598 - HMMPfam-Region of unknown function (DUF2417)-PF10329, at 155480 to 157759 11598

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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151,523 + 11596 mRNA_3228 0.56 1.7
151,598 + 11596 mRNA_3228 0.60 -0.1
151,667 + 11596 mRNA_3228 0.64 0.6
151,694 - 11596 mRNA_3228 0.66 -0.6
151,708 - 11596 mRNA_3228 0.67 2.5
151,708 - 11596 mRNA_3228 0.67 1.2
151,708 - 11596 mRNA_3228 0.67 -2.7
151,708 + 11596 mRNA_3228 0.67 -0.5
151,709 + 11596 mRNA_3228 0.67 1.9
151,709 - 11596 mRNA_3228 0.67 0.4
151,709 - 11596 mRNA_3228 0.67 1.5
151,713 + 11596 mRNA_3228 0.67 1.1
151,765 + 11596 mRNA_3228 0.70 0.8
151,849 + 11596 mRNA_3228 0.75 1.7
152,208 + -0.8
152,295 - -0.5
152,299 - -2.6
152,321 - 2.0
152,344 + -0.3
152,557 + 1.3
152,591 + 0.5
152,600 + -0.1
152,679 - 0.8
152,720 - 11597 mRNA_3229 0.10 0.2
152,993 - 11597 mRNA_3229 0.24 -0.9
153,047 - 11597 mRNA_3229 0.26 0.4
153,166 - 11597 mRNA_3229 0.32 0.1
153,179 + 11597 mRNA_3229 0.33 1.0
153,385 + 11597 mRNA_3229 0.43 0.9
153,593 + 11597 mRNA_3229 0.53 2.7
153,881 - 11597 mRNA_3229 0.68 0.8
153,912 + 11597 mRNA_3229 0.69 1.0
154,487 - -0.8
154,897 - -1.3
154,921 - 0.1
154,927 - -1.5
155,030 - -0.1
155,044 - 1.6
155,076 + 0.3
155,192 - -1.5
155,211 + -1.6
155,214 + -0.6
155,336 - 0.2
155,344 - -0.4
155,348 - 0.3
155,350 - -0.4
155,350 + -0.3
155,352 - 0.5
155,356 + 2.1
155,363 - 0.5
155,368 - 1.0
155,370 - 2.4
155,371 - -0.1
155,373 + -0.6
155,375 - 0.0
155,376 + 0.3
155,378 + -2.6
155,378 + -0.4
155,383 + 1.0
155,419 - 0.4