Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3226

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3225: 11593 - KOG0951 RNA helicase BRR2, DEAD-box superfamily, at 139733 to 140179 11593 mRNA_3226: 11594 - K05535 MNN2 alpha 1,2-mannosyltransferase, at 140412 to 142107 11594

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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139,532 - -1.5
139,543 + -0.8
139,641 - -0.8
139,693 + -0.1
140,078 - 11593 mRNA_3225 0.77 -0.7
140,085 + 11593 mRNA_3225 0.79 0.2
140,092 + 11593 mRNA_3225 0.80 -1.3
140,093 - 11593 mRNA_3225 0.81 0.6
140,095 - 11593 mRNA_3225 0.81 -0.2
140,110 + 11593 mRNA_3225 0.84 0.3
140,180 - 0.1
140,191 + 0.6
140,226 - -1.9
140,300 - 0.1
140,303 - -1.3
140,311 + 0.2
140,400 + -0.3
140,444 - -0.3
140,450 + 0.2
140,584 + 11594 mRNA_3226 0.10 0.0
140,790 + 11594 mRNA_3226 0.22 0.2
140,846 + 11594 mRNA_3226 0.26 0.3
141,117 + 11594 mRNA_3226 0.42 -1.0
141,164 + 11594 mRNA_3226 0.44 0.4
141,288 - 11594 mRNA_3226 0.52 2.2
141,634 - 11594 mRNA_3226 0.72 0.2
141,742 + 11594 mRNA_3226 0.78 0.2
141,747 - 11594 mRNA_3226 0.79 -3.1
141,761 - 11594 mRNA_3226 0.80 -3.4
142,053 - 0.9
142,331 + -0.2
142,333 - 0.4
142,628 + -0.8
142,774 + 1.0
142,776 - 1.6
142,781 + -0.8
142,793 - -0.3
142,809 + -0.0
142,833 + 0.1
142,950 - -1.8