Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3219

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3219: 11587 - HMMPfam-RNase H-PF00075,ProSiteProfiles-RNase H domain profile.-PS50879,SUPERFAMILY--SSF53098, at 125577 to 131824 11587 mRNA_3220: 11588 - KOG0686 COP9 signalosome, subunit CSN1, at 132017 to 133130 11588

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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125,673 + -1.9
125,824 - 0.0
125,836 - 1.0
125,972 - -0.3
126,004 + -1.4
126,140 + -0.8
126,148 - 0.2
126,150 - -0.8
126,153 - 0.2
126,160 - 1.3
126,172 - -1.9
126,280 + 11587 mRNA_3219 0.11 -0.4
126,306 - 11587 mRNA_3219 0.12 1.1
126,484 + 11587 mRNA_3219 0.15 0.4
126,492 + 11587 mRNA_3219 0.15 0.9
126,510 + 11587 mRNA_3219 0.15 -0.3
126,602 + 11587 mRNA_3219 0.16 1.0
127,343 + 11587 mRNA_3219 0.28 -0.7
127,504 - 11587 mRNA_3219 0.31 0.5
127,528 - 11587 mRNA_3219 0.31 -0.5
127,528 - 11587 mRNA_3219 0.31 -2.1
127,528 + 11587 mRNA_3219 0.31 -0.8
127,533 + 11587 mRNA_3219 0.31 0.6
127,539 - 11587 mRNA_3219 0.31 0.8
127,554 + 11587 mRNA_3219 0.32 0.9
127,567 + 11587 mRNA_3219 0.32 -0.2
127,570 + 11587 mRNA_3219 0.32 0.6
127,580 + 11587 mRNA_3219 0.32 -1.5
127,585 + 11587 mRNA_3219 0.32 -0.2
127,588 - 11587 mRNA_3219 0.32 0.1
127,608 + 11587 mRNA_3219 0.33 0.9
127,617 + 11587 mRNA_3219 0.33 -3.2
127,703 + 11587 mRNA_3219 0.34 1.2
127,711 + 11587 mRNA_3219 0.34 0.7
127,715 + 11587 mRNA_3219 0.34 0.9
127,748 + 11587 mRNA_3219 0.35 0.0
127,880 - 11587 mRNA_3219 0.37 -1.2
127,911 - 11587 mRNA_3219 0.37 -1.8
128,006 + 11587 mRNA_3219 0.39 1.0
128,026 - 11587 mRNA_3219 0.39 -0.5
128,038 + 11587 mRNA_3219 0.39 0.5
128,149 - 11587 mRNA_3219 0.41 -0.5
128,173 + 11587 mRNA_3219 0.42 0.4
128,693 - 11587 mRNA_3219 0.50 0.4
128,722 + 11587 mRNA_3219 0.50 -0.3
128,988 + 11587 mRNA_3219 0.55 0.3
129,000 + 11587 mRNA_3219 0.55 0.5
129,005 + 11587 mRNA_3219 0.55 3.3
129,265 - 11587 mRNA_3219 0.59 0.1
129,563 + 11587 mRNA_3219 0.64 0.8
129,591 - 11587 mRNA_3219 0.64 0.6
130,455 - 11587 mRNA_3219 0.78 1.8
130,458 - 11587 mRNA_3219 0.78 -1.3
130,972 + 11587 mRNA_3219 0.86 0.4
131,128 - 11587 mRNA_3219 0.89 0.1
131,459 - 0.4
131,602 - 0.8
131,964 + -3.1
132,026 - 0.0
132,346 - 11588 mRNA_3220 0.30 0.4
132,384 - 11588 mRNA_3220 0.33 -1.1
132,395 - 11588 mRNA_3220 0.34 -2.2