Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3192

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3191: 11559 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 50210 to 52668 11559 mRNA_3192: 11560 - HMMPfam-Hypothetical protein FLILHELTA-PF10306, at 53069 to 53726 11560 mRNA_3193: 11561 - K13116 DDX41, ABS ATP-dependent RNA helicase DDX41, at 53997 to 56662 11561

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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52,183 - 11559 mRNA_3191 0.80 -2.5
52,183 + 11559 mRNA_3191 0.80 -1.8
52,315 - 11559 mRNA_3191 0.86 0.5
52,566 + 2.1
52,631 + 1.3
52,894 + 1.1
52,922 - -0.1
53,157 + 11560 mRNA_3192 0.13 -1.1
53,366 + 11560 mRNA_3192 0.45 0.1
53,508 + 11560 mRNA_3192 0.67 0.3
53,523 + 11560 mRNA_3192 0.69 0.6
53,635 - 11560 mRNA_3192 0.86 -2.4
53,781 - -0.5
53,794 + -0.6
53,901 - 0.5
53,932 + -1.4
53,938 - -1.5
53,944 - -0.0
53,946 - 1.5
53,947 + -1.4
53,949 + 0.6
53,952 + -1.7