Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3180

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3179: 11547 - Hypothetical Protein, at 26940 to 28412 11547 mRNA_3180: 11548 - ProSitePatterns-Zinc finger RanBP2-type signature.-PS01358,SUPERFAMILY--SSF90209, at 29208 to 30655 11548 mRNA_3181: 11549 - KOG4842 Protein involved in sister chromatid separation and/or segregation, at 30988 to 32695 11549

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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28,463 - 1.1
28,508 + 0.1
28,511 - 0.9
28,524 - -1.5
28,942 - -1.4
29,127 + -0.3
29,282 + -0.3
29,324 - 0.3
29,333 - 0.8
29,552 + 11548 mRNA_3180 0.24 0.1
29,627 - 11548 mRNA_3180 0.29 -1.4
29,691 + 11548 mRNA_3180 0.33 0.5
29,701 + 11548 mRNA_3180 0.34 0.4
29,808 - 11548 mRNA_3180 0.41 1.9
29,817 - 11548 mRNA_3180 0.42 1.5
29,820 + 11548 mRNA_3180 0.42 0.4
29,829 - 11548 mRNA_3180 0.43 1.6
29,830 + 11548 mRNA_3180 0.43 -1.8
29,832 - 11548 mRNA_3180 0.43 0.1
29,845 + 11548 mRNA_3180 0.44 1.4
29,943 - 11548 mRNA_3180 0.51 0.6
30,145 - 11548 mRNA_3180 0.65 0.6
30,182 + 11548 mRNA_3180 0.67 0.5
30,281 + 11548 mRNA_3180 0.74 -0.2
30,285 - 11548 mRNA_3180 0.74 0.8
30,341 + 11548 mRNA_3180 0.78 0.0
30,446 - 11548 mRNA_3180 0.85 1.5
30,583 - 0.0
30,602 - 0.5
30,725 + 0.4
30,812 + -0.6
30,890 - 0.9
30,897 + -0.3
31,018 - 1.5
31,022 - -0.7
31,272 + 11549 mRNA_3181 0.17 -0.7
31,364 - 11549 mRNA_3181 0.22 0.7