Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3170

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2174 to 3237 11538 mRNA_3171: 11539 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048, at 4085 to 5766 11539

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,174 - 11537 mRNA_3169 0.65 -0.5
1,174 + 11537 mRNA_3169 0.65 0.5
1,259 + 11537 mRNA_3169 0.73 1.1
1,265 + 11537 mRNA_3169 0.74 0.0
1,268 + 11537 mRNA_3169 0.74 0.7
1,269 - 11537 mRNA_3169 0.74 -0.3
1,288 - 11537 mRNA_3169 0.76 0.4
1,297 + 11537 mRNA_3169 0.77 1.6
1,303 - 11537 mRNA_3169 0.78 -0.9
1,399 + 11537 mRNA_3169 0.87 0.1
1,412 - 11537 mRNA_3169 0.88 -0.2
1,419 - 11537 mRNA_3169 0.89 1.2
1,423 - 11537 mRNA_3169 0.90 -3.7
1,429 - 0.7
1,453 + 1.1
1,459 + 0.5
1,459 + -0.2
1,460 - 0.6
1,461 + -0.3
1,462 + 0.6
1,467 + -2.0
1,470 - -2.6
1,474 - 0.6
1,485 + -0.4
1,520 + 0.6
1,523 + -1.8
1,531 - -1.6
1,537 + 0.4
1,541 + 0.1
1,562 + -1.2
1,567 + 0.1
1,572 + 1.8
1,582 - -1.4
1,584 - 1.0
1,589 + 0.1
1,596 - -0.8
1,601 - -0.6
1,602 + -0.5
1,605 + -1.0
1,609 + -0.1
1,616 + -0.0
1,636 + 0.2
1,654 + -0.7
1,656 - 1.7
1,666 + 0.2
1,675 - -1.0
1,682 - -0.8
1,697 - -0.4
1,709 + 0.6
1,709 - 0.3
1,711 + 0.3
1,718 - 1.0
1,719 + 0.0
1,722 - -0.1
1,723 + 0.0
1,725 - 0.0
1,725 - 1.0
1,727 + -0.0
1,730 + -1.5
1,731 + -0.2
1,732 + -0.4
1,732 + 0.5
1,734 + 1.7
1,734 + -0.2
1,734 + 0.5
1,739 - -0.6
1,740 + 0.6
1,744 - -1.5
1,747 + -0.6
1,749 + -0.8
1,759 + -0.6
1,759 + -0.6
1,759 + 0.1
1,761 + -0.2
1,763 + -1.0
1,765 + -1.1
1,767 + -1.6
1,769 + 0.0
1,772 + -0.6
1,772 + -0.7
1,774 + -1.9
1,774 + 0.5
1,775 + -1.9
1,776 - 0.8
1,776 + -3.0
1,777 + -1.6
1,778 + 1.2
1,778 - -2.0
1,781 - 0.7
1,783 - -0.4
1,783 - 0.1
1,783 - 0.6
1,783 - -1.6
1,784 + -1.2
1,789 + -0.6
1,789 - -2.2
1,791 + -1.2
1,792 + -0.5
1,793 + 0.3
1,795 + -1.0
1,796 + -1.2
1,796 - -1.4
1,798 + -0.4
1,800 + 0.7
1,801 + -2.0
1,805 + -1.5
1,805 + -2.4
1,807 + -1.2
1,813 - -2.0
1,814 + -0.8
1,814 + -0.9
1,818 - -0.6
1,851 - -3.6
1,874 + -0.5
1,881 - -1.5
1,885 - -1.9
1,891 - -3.3
1,896 - -2.8
1,912 + -1.7
1,912 + -3.4
1,914 - -2.2
1,916 - -2.1
1,917 - -1.7
1,919 + -0.9
1,922 - -2.5
1,923 - -2.2
1,934 - -3.7
1,935 + -4.1
1,938 - -4.6
1,938 - -3.9
1,940 - -2.6
1,941 + -2.4
1,941 + -2.5
1,942 + -2.1
1,943 - -3.7
1,944 + -3.6
1,944 - -3.3
1,945 - -2.2
1,945 + -3.2
1,946 - -5.2
1,947 + -2.2
1,960 - -4.4
1,968 + -0.6
1,980 + -3.8
2,015 + -1.9
2,067 - -4.4
2,081 - -3.4
2,091 + -2.8
2,220 + -4.7
2,229 - -2.6
2,235 - -4.2
2,237 - -4.6
2,242 + -0.2
2,242 - -1.0
2,245 - -2.1
2,248 - -2.4
2,251 + -1.7
2,254 - -4.2
2,261 + -4.1
2,262 - -2.8
2,266 + -1.8
2,268 + -3.0
2,400 + 11538 mRNA_3170 0.21 -3.7
2,401 - 11538 mRNA_3170 0.21 -1.8
2,404 + 11538 mRNA_3170 0.22 -3.5
2,414 + 11538 mRNA_3170 0.23 -1.9
2,420 - 11538 mRNA_3170 0.23 -1.5
2,439 + 11538 mRNA_3170 0.25 -4.2
2,446 + 11538 mRNA_3170 0.26 -1.5
2,470 - 11538 mRNA_3170 0.28 -2.5
2,516 - 11538 mRNA_3170 0.32 -1.6
2,550 - 11538 mRNA_3170 0.35 -3.2
2,553 + 11538 mRNA_3170 0.36 -3.7
2,569 + 11538 mRNA_3170 0.37 -0.1
2,573 - 11538 mRNA_3170 0.38 -2.9
2,581 + 11538 mRNA_3170 0.38 -3.2
2,582 + 11538 mRNA_3170 0.38 -1.7
2,611 + 11538 mRNA_3170 0.41 -1.5
2,698 + 11538 mRNA_3170 0.49 -0.4
2,699 + 11538 mRNA_3170 0.49 -4.2
2,755 + 11538 mRNA_3170 0.55 -1.8
2,853 + 11538 mRNA_3170 0.64 -2.1
3,014 - 11538 mRNA_3170 0.79 -1.3
3,407 - -0.3
3,547 - 0.5
3,604 + 0.5
3,607 + -0.3
3,739 - -0.1
3,768 + -0.1
4,061 + -1.3
4,136 - 0.9
4,162 + 0.4
4,176 + -0.1