Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2174 to 3237 11538

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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12 + -0.3
12 + 0.8
15 + 0.5
16 + -0.4
18 + 1.7
22 + -0.3
25 + 1.0
57 - -1.2
61 - 1.4
62 + 0.6
62 + 0.8
66 + 0.3
72 + -0.3
72 + 1.3
72 + 1.9
75 + 1.6
78 - 1.2
105 + 1.7
110 - -1.9
114 + 0.6
115 + -1.6
118 + -1.7
122 + 1.8
122 - -1.0
124 + 1.4
135 + -0.8
147 + -0.1
157 + 1.2
161 + 0.3
168 + 2.1
174 + -0.1
177 - -1.3
228 + 2.0
247 + 1.2
252 - 1.5
253 - 0.3
255 + 0.2
258 + 0.4
264 - 1.6
269 + -0.2
269 - 1.1
274 + 1.8
275 - 0.5
277 + -1.5
280 + 1.1
280 + 1.2
283 - -2.2
285 - 0.7
287 + 1.9
287 + -2.1
288 + -0.6
292 - 1.6
293 + -1.6
298 + -1.2
305 - 0.3
314 + 1.0
320 + 0.5
368 + -0.1
370 - 0.1
372 + 1.4
382 + 2.3
384 + 0.2
391 + 2.3
391 - 0.6
397 + 1.2
397 - 0.9
402 + -2.7
405 + -0.5
423 - -0.8
430 + 0.7
440 + -0.1
446 + 1.3
470 + -1.2
524 + -0.5
532 + -0.9
545 - 1.2
557 + -0.8
569 + 0.4
570 - -4.4
583 + 0.1
584 + -0.4
603 - -0.0
603 + 1.3
634 - 11537 mRNA_3169 0.11 -0.4
636 + 11537 mRNA_3169 0.11 0.8
646 + 11537 mRNA_3169 0.12 -0.6
661 + 11537 mRNA_3169 0.13 -0.6
667 + 11537 mRNA_3169 0.14 0.6
698 + 11537 mRNA_3169 0.17 1.4
704 - 11537 mRNA_3169 0.18 0.3
705 - 11537 mRNA_3169 0.18 -0.9
721 - 11537 mRNA_3169 0.19 0.1
725 + 11537 mRNA_3169 0.20 1.2
738 - 11537 mRNA_3169 0.21 1.8
849 + 11537 mRNA_3169 0.32 1.1
871 + 11537 mRNA_3169 0.34 -2.4
883 + 11537 mRNA_3169 0.35 1.1
894 + 11537 mRNA_3169 0.37 2.8
895 + 11537 mRNA_3169 0.37 -0.5
922 + 11537 mRNA_3169 0.39 0.4
965 - 11537 mRNA_3169 0.44 1.6
1,012 - 11537 mRNA_3169 0.48 -0.9
1,026 + 11537 mRNA_3169 0.50 -0.5
1,026 + 11537 mRNA_3169 0.50 0.7
1,105 + 11537 mRNA_3169 0.58 -0.0
1,123 + 11537 mRNA_3169 0.60 1.1
1,141 + 11537 mRNA_3169 0.61 0.2
1,142 + 11537 mRNA_3169 0.61 1.7
1,165 + 11537 mRNA_3169 0.64 0.1
1,174 - 11537 mRNA_3169 0.65 -0.5
1,174 + 11537 mRNA_3169 0.65 0.5
1,259 + 11537 mRNA_3169 0.73 1.1
1,265 + 11537 mRNA_3169 0.74 0.0
1,268 + 11537 mRNA_3169 0.74 0.7
1,269 - 11537 mRNA_3169 0.74 -0.3
1,288 - 11537 mRNA_3169 0.76 0.4
1,297 + 11537 mRNA_3169 0.77 1.6
1,303 - 11537 mRNA_3169 0.78 -0.9
1,399 + 11537 mRNA_3169 0.87 0.1
1,412 - 11537 mRNA_3169 0.88 -0.2
1,419 - 11537 mRNA_3169 0.89 1.2
1,423 - 11537 mRNA_3169 0.90 -3.7
1,429 - 0.7
1,453 + 1.1
1,459 + 0.5
1,459 + -0.2
1,460 - 0.6
1,461 + -0.3
1,462 + 0.6
1,467 + -2.0
1,470 - -2.6
1,474 - 0.6
1,485 + -0.4
1,520 + 0.6
1,523 + -1.8
1,531 - -1.6
1,537 + 0.4
1,541 + 0.1
1,562 + -1.2
1,567 + 0.1
1,572 + 1.8
1,582 - -1.4
1,584 - 1.0
1,589 + 0.1
1,596 - -0.8
1,601 - -0.6
1,602 + -0.5
1,605 + -1.0
1,609 + -0.1
1,616 + -0.0
1,636 + 0.2
1,654 + -0.7
1,656 - 1.7
1,666 + 0.2
1,675 - -1.0
1,682 - -0.8
1,697 - -0.4
1,709 + 0.6
1,709 - 0.3
1,711 + 0.3
1,718 - 1.0
1,719 + 0.0
1,722 - -0.1
1,723 + 0.0
1,725 - 0.0
1,725 - 1.0
1,727 + -0.0
1,730 + -1.5
1,731 + -0.2
1,732 + -0.4
1,732 + 0.5
1,734 + 1.7
1,734 + -0.2
1,734 + 0.5
1,739 - -0.6
1,740 + 0.6
1,744 - -1.5
1,747 + -0.6
1,749 + -0.8
1,759 + -0.6
1,759 + -0.6
1,759 + 0.1
1,761 + -0.2
1,763 + -1.0
1,765 + -1.1
1,767 + -1.6
1,769 + 0.0
1,772 + -0.6
1,772 + -0.7
1,774 + -1.9
1,774 + 0.5
1,775 + -1.9
1,776 - 0.8
1,776 + -3.0
1,777 + -1.6
1,778 + 1.2
1,778 - -2.0
1,781 - 0.7
1,783 - -0.4
1,783 - 0.1
1,783 - 0.6
1,783 - -1.6
1,784 + -1.2
1,789 + -0.6
1,789 - -2.2
1,791 + -1.2
1,792 + -0.5
1,793 + 0.3
1,795 + -1.0
1,796 + -1.2
1,796 - -1.4
1,798 + -0.4
1,800 + 0.7
1,801 + -2.0
1,805 + -1.5
1,805 + -2.4
1,807 + -1.2
1,813 - -2.0
1,814 + -0.8
1,814 + -0.9
1,818 - -0.6
1,851 - -3.6
1,874 + -0.5
1,881 - -1.5
1,885 - -1.9
1,891 - -3.3
1,896 - -2.8
1,912 + -1.7
1,912 + -3.4
1,914 - -2.2
1,916 - -2.1
1,917 - -1.7
1,919 + -0.9
1,922 - -2.5
1,923 - -2.2
1,934 - -3.7
1,935 + -4.1
1,938 - -4.6
1,938 - -3.9
1,940 - -2.6
1,941 + -2.4
1,941 + -2.5
1,942 + -2.1
1,943 - -3.7
1,944 + -3.6
1,944 - -3.3
1,945 - -2.2
1,945 + -3.2
1,946 - -5.2
1,947 + -2.2
1,960 - -4.4
1,968 + -0.6
1,980 + -3.8
2,015 + -1.9
2,067 - -4.4
2,081 - -3.4
2,091 + -2.8
2,220 + -4.7
2,229 - -2.6
2,235 - -4.2
2,237 - -4.6
2,242 + -0.2
2,242 - -1.0
2,245 - -2.1
2,248 - -2.4
2,251 + -1.7
2,254 - -4.2
2,261 + -4.1
2,262 - -2.8
2,266 + -1.8
2,268 + -3.0
2,400 + 11538 mRNA_3170 0.21 -3.7
2,401 - 11538 mRNA_3170 0.21 -1.8
2,404 + 11538 mRNA_3170 0.22 -3.5
2,414 + 11538 mRNA_3170 0.23 -1.9
2,420 - 11538 mRNA_3170 0.23 -1.5
2,439 + 11538 mRNA_3170 0.25 -4.2
2,446 + 11538 mRNA_3170 0.26 -1.5
2,470 - 11538 mRNA_3170 0.28 -2.5
2,516 - 11538 mRNA_3170 0.32 -1.6