Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3156

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3155: 11523 - HMMPfam-Fungal protein of unknown function (DUF1752)-PF08550, at 443800 to 447457 11523 mRNA_3156: 11524 - K12662 PRPF4, PRP4 U4/U6 small nuclear ribonucleoprotein PRP4, at 448077 to 450028 11524 mRNA_3157: 11525 - K00942 E2.7.4.8, gmk guanylate kinase, at 450126 to 451000 11525

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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447,082 - 11523 mRNA_3155 0.90 -0.7
447,257 - 0.4
447,543 + 0.3
447,554 - -0.5
447,555 + -0.7
447,558 + 0.6
447,679 - 0.3
447,838 + 0.7
447,846 - -0.7
447,850 - 0.0
447,854 - -2.5
448,004 + 0.3
448,019 - -2.5
448,140 + 0.4
448,146 - 0.9
448,162 + 0.2
448,165 + -0.3
448,175 + 0.8
448,230 + -0.1
448,286 - 11524 mRNA_3156 0.11 0.4
448,303 - 11524 mRNA_3156 0.12 0.5
448,308 - 11524 mRNA_3156 0.12 -0.6
448,436 + 11524 mRNA_3156 0.18 2.0
448,598 - 11524 mRNA_3156 0.27 0.5
448,604 + 11524 mRNA_3156 0.27 0.2
448,609 - 11524 mRNA_3156 0.27 -1.3
448,613 + 11524 mRNA_3156 0.27 -0.5
448,634 + 11524 mRNA_3156 0.29 -1.3
448,647 - 11524 mRNA_3156 0.29 -2.1
448,728 - 11524 mRNA_3156 0.33 -1.1
448,747 - 11524 mRNA_3156 0.34 0.8
449,150 - 11524 mRNA_3156 0.55 0.4
449,221 - 11524 mRNA_3156 0.59 0.1
449,447 + 11524 mRNA_3156 0.70 -0.8
449,481 + 11524 mRNA_3156 0.72 -0.3
449,627 - 11524 mRNA_3156 0.79 -0.2
450,031 + 0.2
450,046 + 0.0
450,320 + 11525 mRNA_3157 0.22 0.6
450,483 + 11525 mRNA_3157 0.41 0.3
450,606 - 11525 mRNA_3157 0.55 0.4
450,608 - 11525 mRNA_3157 0.55 0.5
450,614 + 11525 mRNA_3157 0.56 0.3
450,633 + 11525 mRNA_3157 0.58 -0.2
450,768 + 11525 mRNA_3157 0.73 -1.4
450,770 + 11525 mRNA_3157 0.74 -0.8
450,912 + 11525 mRNA_3157 0.90 0.5
450,986 + -1.0