Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3145

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3144: 11512 - Hypothetical Protein, at 417526 to 421368 11512 mRNA_3145: 11513 - HMMPfam-haloacid dehalogenase-like hydrolase-PF08282,SUPERFAMILY--SSF56784,TIGRFAM-Cof-subfamily Cof-like hydrolase-TIGR00099,TIGRFAM-HAD-SF-IIB HAD hydrolase, family IIB-TIGR01484, at 422365 to 423654 11513 mRNA_3146: 11514 - K11273 DDX11, CHL1, CTF1 chromosome transmission fidelity protein 1, at 423793 to 427312 11514

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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421,438 - 0.9
421,469 - -3.6
421,470 - -1.7
421,476 + 0.9
421,478 - -0.7
421,480 + -0.4
421,494 - 0.5
421,526 - -0.1
421,594 + 0.3
421,596 - -0.3
421,603 - 0.3
421,614 + 0.0
421,617 - -2.4
421,618 + -0.0
421,622 - -0.2
421,622 - 1.5
421,624 - -1.3
421,634 - 0.4
421,652 + 0.7
421,656 + 1.2
421,658 + 0.7
421,660 + 1.1
421,667 + -1.1
421,676 + -0.7
421,717 - -1.1
421,730 + -1.1
421,730 - -0.2
421,732 - 0.6
421,735 + 0.2
421,737 - -1.0
421,738 + 1.5
421,739 + 0.5
421,741 - 0.8
421,747 - -0.1
421,753 - 1.1
421,758 + -0.2
421,759 + 0.2
421,759 + 1.7
421,760 + 2.9
421,760 + -0.3
421,760 + -0.4
421,762 - 0.3
421,763 - 0.1
421,764 - 0.1
421,765 + 0.1
421,766 + -1.5
421,768 + 1.5
421,776 + 0.3
421,779 + -1.1
421,781 + 0.1
421,784 + 0.8
421,793 + -1.0
421,796 - 0.2
421,798 - 1.9
421,798 - -0.0
421,806 - -1.1
421,806 - 0.2
421,811 + 2.3
421,815 + 0.4
421,825 + 0.9
421,833 - 1.7
421,940 + -0.4
421,942 - 1.4
421,956 - -0.1
421,956 - -0.9
421,959 - -0.3
421,963 + -0.5
421,969 - -0.6
421,972 - -2.4
421,981 - 2.5
421,984 - -0.9
421,985 - -0.7
421,997 - 0.1
421,998 + 1.0
421,999 + -0.3
422,002 + -0.4
422,018 - -0.1
422,020 + 0.9
422,020 - 0.6
422,031 + 1.9
422,031 + 0.0
422,040 - -1.8
422,042 + 0.7
422,043 - 0.3
422,044 - 0.2
422,048 + -1.3
422,050 + -0.3
422,051 + -0.6
422,052 + -1.3
422,066 - 0.1
422,072 + -1.3
422,072 - 0.9
422,074 - 0.0
422,075 - -0.5
422,085 + -0.8
422,113 - -0.7
422,132 + 1.0
422,145 + -1.7
422,163 + 0.2
422,165 - -0.5
422,174 + 0.1
422,174 + -1.3
422,188 - 1.4
422,195 - -1.4
422,205 + 0.2
422,207 + 0.6
422,212 - -1.5
422,214 + 1.3
422,221 - -0.8
422,223 - -2.4
422,237 - 0.1
422,255 - -0.3
422,271 + 0.2
422,276 + 0.6
422,280 + 1.4
422,314 - 1.1
422,351 - -1.4
422,364 - -1.3
422,382 + -0.3
422,513 + 11513 mRNA_3145 0.11 0.5
422,517 + 11513 mRNA_3145 0.12 0.5
422,525 + 11513 mRNA_3145 0.12 -2.1
422,527 - 11513 mRNA_3145 0.13 0.3
422,529 + 11513 mRNA_3145 0.13 0.2
422,538 + 11513 mRNA_3145 0.13 -1.8
422,616 - 11513 mRNA_3145 0.19 -1.4
422,642 + 11513 mRNA_3145 0.21 -0.8
422,660 + 11513 mRNA_3145 0.23 -0.5
422,660 - 11513 mRNA_3145 0.23 0.9
422,662 + 11513 mRNA_3145 0.23 -1.6
422,689 - 11513 mRNA_3145 0.25 -0.2
422,713 + 11513 mRNA_3145 0.27 -0.0
422,778 - 11513 mRNA_3145 0.32 -0.2
422,923 - 11513 mRNA_3145 0.43 -0.7
423,146 + 11513 mRNA_3145 0.61 0.7
423,160 - 11513 mRNA_3145 0.62 0.7
423,386 + 11513 mRNA_3145 0.79 0.3
423,418 - 11513 mRNA_3145 0.82 2.0
423,449 - 11513 mRNA_3145 0.84 -1.0
423,553 - 0.8
423,553 + -0.2
423,587 - -0.4
423,640 - 0.2
423,685 + 0.4
423,708 + 0.0
423,963 - -0.4
424,268 - 11514 mRNA_3146 0.13 0.7
424,452 + 11514 mRNA_3146 0.19 1.7
424,455 - 11514 mRNA_3146 0.19 0.3
424,517 + 11514 mRNA_3146 0.21 1.5
424,562 - 11514 mRNA_3146 0.22 0.2