Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3138

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3137: 11505 - SUPERFAMILY--SSF48208, at 407732 to 408630 11505 mRNA_3138: 11506 - K13106 BUD13, CWC26 pre-mRNA-splicing factor CWC26, at 408830 to 410030 11506 mRNA_3139: 11507 - HMMPfam-Acetyltransferase (GNAT) domain-PF13302,SUPERFAMILY--SSF55729, at 410271 to 410837 11507

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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407,871 + 11505 mRNA_3137 0.15 0.1
407,875 - 11505 mRNA_3137 0.16 -1.0
407,932 + 11505 mRNA_3137 0.22 1.1
408,220 - 11505 mRNA_3137 0.54 -0.9
408,266 + 11505 mRNA_3137 0.59 1.3
408,267 - 11505 mRNA_3137 0.60 0.4
408,311 - 11505 mRNA_3137 0.64 0.1
408,357 - 11505 mRNA_3137 0.70 -2.4
408,510 - 11505 mRNA_3137 0.87 -1.4
408,556 + 0.1
408,566 + 0.8
408,638 - 1.3
408,652 - 1.2
408,665 + -1.3
408,669 - 1.1
408,669 - 0.9
408,673 - -1.8
408,676 - 0.0
408,681 - -0.0
408,782 + 0.1
408,813 - 0.4
408,948 + 0.8
408,962 - 11506 mRNA_3138 0.11 -1.0
408,971 + 11506 mRNA_3138 0.12 -1.0
408,971 - 11506 mRNA_3138 0.12 -1.5
408,976 - 11506 mRNA_3138 0.12 0.3
409,061 - 11506 mRNA_3138 0.19 0.9
409,081 - 11506 mRNA_3138 0.21 0.0
409,105 - 11506 mRNA_3138 0.23 1.0
409,107 + 11506 mRNA_3138 0.23 1.2
409,109 - 11506 mRNA_3138 0.23 0.0
409,134 + 11506 mRNA_3138 0.25 -0.3
409,418 + 11506 mRNA_3138 0.49 -0.7
409,533 - 11506 mRNA_3138 0.59 -0.0
409,674 - 11506 mRNA_3138 0.70 0.1
409,714 - 11506 mRNA_3138 0.74 -0.7
409,887 + 11506 mRNA_3138 0.88 -1.0
409,919 + 0.1
409,981 + -0.0
409,982 - -0.2
410,015 - -0.4
410,053 - 0.5
410,116 + -2.9
410,149 + -0.0
410,325 + 0.4
410,342 + 11507 mRNA_3139 0.13 -0.6
410,423 - 11507 mRNA_3139 0.27 -1.4
410,460 + 11507 mRNA_3139 0.33 0.3
410,477 - 11507 mRNA_3139 0.36 -0.0
410,560 + 11507 mRNA_3139 0.51 1.1
410,576 + 11507 mRNA_3139 0.54 0.2
410,576 + 11507 mRNA_3139 0.54 0.5
410,587 + 11507 mRNA_3139 0.56 -0.0
410,593 + 11507 mRNA_3139 0.57 0.1
410,644 - 11507 mRNA_3139 0.66 0.1
410,720 + 11507 mRNA_3139 0.79 0.6
410,758 - 11507 mRNA_3139 0.86 0.1
410,795 + -0.3
410,798 - 0.5
410,855 + -0.4
410,860 - 0.8
410,866 - 0.5
410,927 + -0.1
410,955 - -1.4
410,963 - 0.7
410,978 - -0.4
410,998 + 0.1
411,007 + 1.0
411,012 - 1.0
411,019 + -1.4
411,021 + 0.9
411,021 + -0.7