Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3137

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3136: 11504 - KOG2615 Permease of the major facilitator superfamily, at 401491 to 407249 11504 mRNA_3137: 11505 - SUPERFAMILY--SSF48208, at 407732 to 408630 11505 mRNA_3138: 11506 - K13106 BUD13, CWC26 pre-mRNA-splicing factor CWC26, at 408830 to 410030 11506

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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406,739 - 0.3
406,752 + 1.2
406,758 - -2.0
406,978 - 1.5
406,979 - 0.2
406,981 - -2.5
407,027 - -0.5
407,148 + -2.3
407,294 - 1.0
407,315 + 0.1
407,451 + 1.0
407,529 + -0.5
407,554 - 0.5
407,601 - 0.5
407,652 + 0.4
407,760 + -2.0
407,796 + -0.6
407,807 - -0.9
407,871 + 11505 mRNA_3137 0.15 0.1
407,875 - 11505 mRNA_3137 0.16 -1.0
407,932 + 11505 mRNA_3137 0.22 1.1
408,220 - 11505 mRNA_3137 0.54 -0.9
408,266 + 11505 mRNA_3137 0.59 1.3
408,267 - 11505 mRNA_3137 0.60 0.4
408,311 - 11505 mRNA_3137 0.64 0.1
408,357 - 11505 mRNA_3137 0.70 -2.4
408,510 - 11505 mRNA_3137 0.87 -1.4
408,556 + 0.1
408,566 + 0.8
408,638 - 1.3
408,652 - 1.2
408,665 + -1.3
408,669 - 1.1
408,669 - 0.9
408,673 - -1.8
408,676 - 0.0
408,681 - -0.0
408,782 + 0.1
408,813 - 0.4
408,948 + 0.8
408,962 - 11506 mRNA_3138 0.11 -1.0
408,971 + 11506 mRNA_3138 0.12 -1.0
408,971 - 11506 mRNA_3138 0.12 -1.5
408,976 - 11506 mRNA_3138 0.12 0.3
409,061 - 11506 mRNA_3138 0.19 0.9
409,081 - 11506 mRNA_3138 0.21 0.0
409,105 - 11506 mRNA_3138 0.23 1.0
409,107 + 11506 mRNA_3138 0.23 1.2
409,109 - 11506 mRNA_3138 0.23 0.0
409,134 + 11506 mRNA_3138 0.25 -0.3
409,418 + 11506 mRNA_3138 0.49 -0.7
409,533 - 11506 mRNA_3138 0.59 -0.0