Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3130

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3130: 11498 - KOG2109 WD40 repeat protein, at 387441 to 391334 11498 mRNA_3131: 11499 - KOG1230 Protein containing repeated kelch motifs, at 391641 to 394728 11499

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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386,534 + -0.7
386,545 - -0.7
386,549 - 0.4
386,566 - 0.4
386,713 - 0.1
386,731 + -0.6
386,845 - -0.4
386,855 - 0.6
387,131 + -0.3
387,132 - 1.4
387,132 - 1.1
387,145 + -0.3
387,148 + -0.7
387,152 - 1.9
387,154 + -0.2
387,154 + 0.1
387,159 + 0.8
387,161 + -0.5
387,168 + -0.9
387,173 + 0.9
387,292 - -0.6
387,300 + -0.3
387,307 + 2.9
387,308 - 0.4
387,312 - -5.6
387,313 + 1.6
387,332 + 0.8
387,333 + 0.5
387,464 - 0.1
387,465 - -0.5
387,472 + 0.6
387,489 + 0.2
387,515 + -0.2
387,607 + -1.5
387,608 - 1.8
387,617 - -0.4
387,633 + -0.0
387,894 - 11498 mRNA_3130 0.12 1.9
387,899 + 11498 mRNA_3130 0.12 -0.4
387,899 + 11498 mRNA_3130 0.12 1.3
388,068 + 11498 mRNA_3130 0.16 0.2
388,225 - 11498 mRNA_3130 0.20 -0.0
388,343 - 11498 mRNA_3130 0.23 0.4
388,364 - 11498 mRNA_3130 0.24 -2.4
388,371 + 11498 mRNA_3130 0.24 -0.9
388,444 - 11498 mRNA_3130 0.26 0.3
388,463 + 11498 mRNA_3130 0.26 -1.4
388,471 - 11498 mRNA_3130 0.26 -1.2
388,752 + 11498 mRNA_3130 0.34 2.5
388,914 + 11498 mRNA_3130 0.38 0.4
389,076 - 11498 mRNA_3130 0.42 0.7
389,124 - 11498 mRNA_3130 0.43 2.0
389,222 - 11498 mRNA_3130 0.46 0.3
389,392 + 11498 mRNA_3130 0.50 2.1
389,397 - 11498 mRNA_3130 0.50 1.7
389,510 + 11498 mRNA_3130 0.53 0.7
389,779 - 11498 mRNA_3130 0.60 -1.9
389,834 + 11498 mRNA_3130 0.61 1.5
389,985 + 11498 mRNA_3130 0.65 -2.5
390,138 + 11498 mRNA_3130 0.69 -0.2
390,270 - 11498 mRNA_3130 0.73 1.9
390,376 + 11498 mRNA_3130 0.75 0.7
390,417 + 11498 mRNA_3130 0.76 -0.6
390,538 + 11498 mRNA_3130 0.80 -0.5
390,549 - 11498 mRNA_3130 0.80 -0.3
390,703 - 11498 mRNA_3130 0.84 -0.4
390,706 + 11498 mRNA_3130 0.84 1.2
390,719 + 11498 mRNA_3130 0.84 -0.3
390,721 + 11498 mRNA_3130 0.84 0.7
390,854 - 11498 mRNA_3130 0.88 0.5
390,896 - 11498 mRNA_3130 0.89 -2.4
391,116 - 0.3
391,132 + -0.3
391,152 - -0.5
391,305 + -1.2
391,309 + -1.0
391,424 - 1.9
391,585 + -0.1
391,588 + 1.0
391,622 - 0.7
392,104 - 11499 mRNA_3131 0.15 2.1
392,295 - 11499 mRNA_3131 0.21 -1.1
392,303 + 11499 mRNA_3131 0.21 0.8
392,319 - 11499 mRNA_3131 0.22 -1.8
392,331 - 11499 mRNA_3131 0.22 1.0