Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3111

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3110: 11478 - K14558 PWP2, UTP1 periodic tryptophan protein 2, at 346099 to 349205 11478 mRNA_3111: 11479 - K09788 prpF 2-methylaconitate isomerase, at 349482 to 350899 11479 mRNA_3112: 11480 - Hypothetical Protein, at 351079 to 352331 11480

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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348,527 - 11478 mRNA_3110 0.78 0.1
348,545 + 11478 mRNA_3110 0.79 -2.3
348,708 + 11478 mRNA_3110 0.84 -1.2
348,714 + 11478 mRNA_3110 0.84 -0.1
348,991 + 1.8
348,994 - -0.7
349,093 - 1.1
349,126 - -0.2
349,139 + -2.1
349,279 + -0.0
349,282 - -0.7
349,284 - 1.3
349,306 - -1.1
349,428 - 0.9
349,442 - 1.2
349,450 - -0.1
349,468 + 0.3
349,565 - 0.0
349,590 - 1.4
349,597 + 1.8
349,650 - 11479 mRNA_3111 0.12 -0.5
349,872 - 11479 mRNA_3111 0.28 1.8
350,002 - 11479 mRNA_3111 0.37 -0.7
350,009 + 11479 mRNA_3111 0.37 1.0
350,032 + 11479 mRNA_3111 0.39 -2.0
350,158 - 11479 mRNA_3111 0.48 -1.1
350,309 + 11479 mRNA_3111 0.58 -0.0
350,440 - 11479 mRNA_3111 0.68 0.9
350,449 + 11479 mRNA_3111 0.68 0.1
350,466 - 11479 mRNA_3111 0.69 1.5
350,559 - 11479 mRNA_3111 0.76 -0.3
350,842 - -0.5
350,889 + 1.6
350,906 + 0.1
350,939 + 0.5
351,019 - 0.3
351,021 + -0.2
351,029 - 0.9
351,033 - -0.5
351,066 - -0.5
351,228 + 11480 mRNA_3112 0.12 0.6
351,634 - 11480 mRNA_3112 0.44 -0.2
351,634 - 11480 mRNA_3112 0.44 0.2
351,634 - 11480 mRNA_3112 0.44 -0.3
351,638 + 11480 mRNA_3112 0.45 1.8
351,716 + 11480 mRNA_3112 0.51 2.4
351,725 - 11480 mRNA_3112 0.52 -0.9
351,753 - 11480 mRNA_3112 0.54 0.8
351,772 - 11480 mRNA_3112 0.55 -0.2
351,775 - 11480 mRNA_3112 0.56 -1.9