Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3110

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3109: 11477 - K13172 SRRM2, SRM300 serine/arginine repetitive matrix protein 2, at 344614 to 345945 11477 mRNA_3110: 11478 - K14558 PWP2, UTP1 periodic tryptophan protein 2, at 346099 to 349205 11478 mRNA_3111: 11479 - K09788 prpF 2-methylaconitate isomerase, at 349482 to 350899 11479

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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345,141 - 11477 mRNA_3109 0.40 -1.3
345,142 + 11477 mRNA_3109 0.40 1.0
345,165 + 11477 mRNA_3109 0.41 0.3
345,306 - 11477 mRNA_3109 0.52 -0.6
345,430 - 11477 mRNA_3109 0.61 0.7
345,438 + 11477 mRNA_3109 0.62 -1.0
345,473 - 11477 mRNA_3109 0.64 1.1
345,581 + 11477 mRNA_3109 0.73 0.1
345,621 + 11477 mRNA_3109 0.76 0.4
345,914 - -0.9
346,065 + 0.2
346,186 + 0.9
346,189 - -0.8
346,432 + 11478 mRNA_3110 0.11 -0.6
346,452 - 11478 mRNA_3110 0.11 0.3
346,597 + 11478 mRNA_3110 0.16 1.1
346,618 - 11478 mRNA_3110 0.17 -1.0
346,666 - 11478 mRNA_3110 0.18 0.5
346,700 - 11478 mRNA_3110 0.19 -1.5
346,757 + 11478 mRNA_3110 0.21 -0.4
346,772 + 11478 mRNA_3110 0.22 -0.2
346,798 - 11478 mRNA_3110 0.22 -0.7
347,070 + 11478 mRNA_3110 0.31 0.1
347,081 - 11478 mRNA_3110 0.32 1.3
347,342 + 11478 mRNA_3110 0.40 0.1
347,359 - 11478 mRNA_3110 0.41 0.3
347,366 + 11478 mRNA_3110 0.41 -0.1
347,369 - 11478 mRNA_3110 0.41 0.5
347,598 + 11478 mRNA_3110 0.48 0.8
347,612 + 11478 mRNA_3110 0.49 -3.9
347,748 + 11478 mRNA_3110 0.53 -2.0
347,837 + 11478 mRNA_3110 0.56 -0.9
347,937 + 11478 mRNA_3110 0.59 0.0
348,088 - 11478 mRNA_3110 0.64 -1.2
348,109 + 11478 mRNA_3110 0.65 0.7
348,179 - 11478 mRNA_3110 0.67 0.3
348,257 + 11478 mRNA_3110 0.69 -2.6
348,527 - 11478 mRNA_3110 0.78 0.1
348,545 + 11478 mRNA_3110 0.79 -2.3
348,708 + 11478 mRNA_3110 0.84 -1.2
348,714 + 11478 mRNA_3110 0.84 -0.1
348,991 + 1.8
348,994 - -0.7
349,093 - 1.1
349,126 - -0.2
349,139 + -2.1
349,279 + -0.0
349,282 - -0.7
349,284 - 1.3
349,306 - -1.1
349,428 - 0.9
349,442 - 1.2
349,450 - -0.1
349,468 + 0.3
349,565 - 0.0
349,590 - 1.4
349,597 + 1.8
349,650 - 11479 mRNA_3111 0.12 -0.5
349,872 - 11479 mRNA_3111 0.28 1.8
350,002 - 11479 mRNA_3111 0.37 -0.7
350,009 + 11479 mRNA_3111 0.37 1.0
350,032 + 11479 mRNA_3111 0.39 -2.0
350,158 - 11479 mRNA_3111 0.48 -1.1