Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3107

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3106: 11474 - BLAST potential peroxisomal matrix Pex8 protein [Pseudo..., at 336211 to 338758 11474 mRNA_3107: 11475 - K11412 SIRT2, SIR2L2 NAD-dependent deacetylase sirtuin 2, at 339155 to 340730 11475 mRNA_3108: 11476 - KOG2203 GTP-binding protein, at 340842 to 344399 11476

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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338,269 + 11474 mRNA_3106 0.81 0.0
338,282 - 11474 mRNA_3106 0.81 -2.2
338,289 + 11474 mRNA_3106 0.82 -0.4
338,382 - 11474 mRNA_3106 0.85 -1.3
338,568 - 0.1
338,572 - 0.1
338,691 - 1.0
338,702 - -0.3
338,704 + 2.4
338,729 + -1.0
338,811 + -0.3
338,850 - 0.4
339,011 + 0.2
339,016 - -1.4
339,021 - 1.2
339,152 - -1.9
339,300 + -0.4
339,310 + -0.3
339,565 - 11475 mRNA_3107 0.26 0.0
339,885 - 11475 mRNA_3107 0.46 -1.1
339,899 - 11475 mRNA_3107 0.47 0.1
340,066 - 11475 mRNA_3107 0.58 -0.6
340,193 - 11475 mRNA_3107 0.66 -0.7
340,195 - 11475 mRNA_3107 0.66 0.7
340,288 - 11475 mRNA_3107 0.72 0.8
340,635 + -0.4
340,676 - 0.1
340,790 - -0.0
340,907 - -0.1
341,035 - -0.8
341,059 - 0.6
341,067 + 0.5
341,086 - 0.4
341,250 + 11476 mRNA_3108 0.11 1.2
341,659 + 11476 mRNA_3108 0.23 -0.5
341,682 + 11476 mRNA_3108 0.24 3.0