Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3087

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3086: 11454 - K03136 TFIIE1, GTF2E1, TFA1, tfe transcription initiation factor TFIIE subunit alpha, at 286949 to 288955 11454 mRNA_3087: 11455 - HMMPfam-haloacid dehalogenase-like hydrolase-PF12710,SUPERFAMILY--SSF56784,TIGRFAM-HAD-SF-IB HAD phosphoserine phosphatase-like hydrolase, family IB-TIGR01488,TIGRFAM-DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase-TIGR01489, at 289552 to 290619 11455 mRNA_3088: 11456 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 290812 to 293862 11456

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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288,602 - 11454 mRNA_3086 0.82 -1.4
288,603 + 11454 mRNA_3086 0.82 -0.8
288,681 + 11454 mRNA_3086 0.86 -2.3
288,693 + 11454 mRNA_3086 0.87 -0.2
288,948 - -0.0
288,957 + 0.7
289,069 - 0.9
289,081 + 1.1
289,094 - -2.3
289,097 - 1.2
289,098 - 0.8
289,107 - 2.6
289,110 - -1.0
289,115 - -0.5
289,119 + 0.5
289,243 - -0.3
289,247 + 1.6
289,249 + -0.6
289,280 + 0.1
289,403 + 0.5
289,405 + 2.5
289,410 + -1.3
289,566 + 0.8
289,698 + 11455 mRNA_3087 0.14 -0.7
289,983 + 11455 mRNA_3087 0.40 0.0
290,096 + 11455 mRNA_3087 0.51 0.1
290,119 + 11455 mRNA_3087 0.53 -0.2
290,295 - 11455 mRNA_3087 0.70 0.7
290,411 - 11455 mRNA_3087 0.80 -0.5
290,435 + 11455 mRNA_3087 0.83 0.2
290,443 + 11455 mRNA_3087 0.83 -0.2
290,452 + 11455 mRNA_3087 0.84 0.2
290,542 - 1.1
290,551 + 1.3
290,561 - -1.1
290,565 + 0.0
290,570 - 0.2
290,573 + 0.1
290,576 + 0.6
290,581 + -1.7
290,620 - -0.2
290,622 + -1.2
290,647 - -0.6
290,657 - -0.3
290,659 + 0.3
290,660 + -0.5
290,663 - 2.8
290,665 - -0.7
290,667 + -0.3
290,667 - -0.5
290,676 + -2.2
290,685 + -0.1
290,686 - 0.8
290,686 - 0.3
290,687 - 1.6
290,689 + 1.7
290,689 + 1.1
290,689 + -1.7
290,690 - -1.8
290,693 - 0.2
290,694 + -0.1
290,699 - -0.3
290,706 + 0.8
290,706 + -0.5
290,707 - 0.2
290,711 - -4.4
290,717 + 0.3
290,735 - 0.4
290,742 + -2.3
290,742 + 0.9
290,745 + 0.2
290,839 + 0.3
290,858 + -0.4
290,858 - 0.3
290,866 - -0.3
290,905 - -0.7
290,905 - -0.7
290,910 - -0.3
290,915 + 0.5
291,012 - 0.7
291,027 + 0.5
291,110 + 0.0
291,160 + 11456 mRNA_3088 0.11 -0.7
291,310 - 11456 mRNA_3088 0.16 0.5
291,457 + 11456 mRNA_3088 0.21 0.6
291,467 + 11456 mRNA_3088 0.21 -0.7