Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3073

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3072: 11440 - KOG1203 Predicted dehydrogenase, at 248202 to 249247 11440 mRNA_3073: 11441 - ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SUPERFAMILY--SSF57667, at 249401 to 250160 11441 mRNA_3074: 11442 - KOG4650 Predicted steroid reductase, at 250206 to 251968 11442

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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248,413 + 11440 mRNA_3072 0.20 -2.1
248,507 + 11440 mRNA_3072 0.29 0.5
248,537 - 11440 mRNA_3072 0.32 0.1
248,546 + 11440 mRNA_3072 0.33 0.8
248,651 + 11440 mRNA_3072 0.43 0.6
248,686 - 11440 mRNA_3072 0.46 -3.0
248,827 - 11440 mRNA_3072 0.60 0.3
248,923 - 11440 mRNA_3072 0.69 0.1
248,928 + 11440 mRNA_3072 0.69 -0.8
248,964 + 11440 mRNA_3072 0.73 0.3
248,973 + 11440 mRNA_3072 0.74 -0.1
249,059 + 11440 mRNA_3072 0.82 0.1
249,406 + 1.5
249,430 + 0.6
249,552 + 11441 mRNA_3073 0.20 -0.2
249,695 + 11441 mRNA_3073 0.39 1.8
249,696 - 11441 mRNA_3073 0.39 1.4
249,701 + 11441 mRNA_3073 0.39 2.3
249,762 - 11441 mRNA_3073 0.47 -0.1
249,822 - 11441 mRNA_3073 0.55 0.4
249,841 + 11441 mRNA_3073 0.58 0.7
249,845 + 11441 mRNA_3073 0.58 1.4
249,858 + 11441 mRNA_3073 0.60 -0.1
249,860 + 11441 mRNA_3073 0.60 1.7
249,861 + 11441 mRNA_3073 0.61 0.9
249,898 + 11441 mRNA_3073 0.65 0.8
249,927 - 11441 mRNA_3073 0.69 0.2
249,978 + 11441 mRNA_3073 0.76 -0.6
249,983 - 11441 mRNA_3073 0.77 0.4
250,002 + 11441 mRNA_3073 0.79 0.1
250,015 + 11441 mRNA_3073 0.81 0.3
250,017 - 11441 mRNA_3073 0.81 0.1
250,017 - 11441 mRNA_3073 0.81 -0.6
250,030 - 11441 mRNA_3073 0.83 0.4
250,132 + 0.2
250,137 - -1.0
250,138 + 0.0
250,143 + 0.2
250,166 - 1.5
250,283 - -0.3
250,290 - -2.6
250,302 + 1.0
250,304 + 1.0
250,327 - -1.5
250,478 + 11442 mRNA_3074 0.15 -0.7
250,597 - 11442 mRNA_3074 0.22 0.8
250,619 - 11442 mRNA_3074 0.23 0.1
250,730 + 11442 mRNA_3074 0.30 -0.9
250,851 - 11442 mRNA_3074 0.37 -2.5
250,852 + 11442 mRNA_3074 0.37 1.4
250,868 - 11442 mRNA_3074 0.38 -0.3
250,879 + 11442 mRNA_3074 0.38 1.4
250,986 + 11442 mRNA_3074 0.44 -0.5
251,009 + 11442 mRNA_3074 0.46 -2.1
251,073 - 11442 mRNA_3074 0.49 -1.3
251,113 + 11442 mRNA_3074 0.51 -0.3
251,138 - 11442 mRNA_3074 0.53 0.4
251,156 + 11442 mRNA_3074 0.54 1.3