Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3034

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3034: 11402 - K05767 IQGAP2_3 Ras GTPase-activating-like protein IQGAP2/3, at 148393 to 151658 11402 mRNA_3035: 11403 - K03661 ATPeV0B, ATP6F V-type H+-transporting ATPase 21kDa proteolipid subunit, at 151976 to 152968 11403

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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147,413 - -0.4
147,524 - -1.8
147,799 + 0.2
147,977 + 0.7
147,990 - 0.9
148,016 + -0.0
148,026 + 0.7
148,031 + -0.0
148,040 + -0.1
148,065 + -1.1
148,093 - 1.3
148,118 - 0.3
148,122 - -0.3
148,132 - -0.1
148,142 + -1.8
148,142 + 2.6
148,299 - -0.4
148,301 - -1.6
148,422 + 1.8
148,428 + 0.5
148,453 + 0.9
148,582 - -2.6
148,700 + 0.3
148,727 + 11402 mRNA_3034 0.10 1.8
148,832 - 11402 mRNA_3034 0.13 0.6
148,992 + 11402 mRNA_3034 0.18 0.9
149,009 - 11402 mRNA_3034 0.19 -1.1
149,018 - 11402 mRNA_3034 0.19 1.1
149,027 + 11402 mRNA_3034 0.19 0.4
149,191 - 11402 mRNA_3034 0.24 0.7
150,187 - 11402 mRNA_3034 0.55 0.1
150,340 + 11402 mRNA_3034 0.60 0.3
150,346 + 11402 mRNA_3034 0.60 0.1
150,889 - 11402 mRNA_3034 0.76 1.3
151,009 + 11402 mRNA_3034 0.80 -2.7
151,253 - 11402 mRNA_3034 0.88 -0.3
151,604 - 1.7
151,652 - 0.3
151,769 + -0.2
151,874 + 0.6