Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3024

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3023: 11391 - K04709 LAG1 Acyl-CoA-dependent ceramide synthase, at 119242 to 120921 11391 mRNA_3024: 11392 - K20366 ERGIC2, ERV41 endoplasmic reticulum-Golgi intermediate compartment protein 2, at 121077 to 122686 11392 mRNA_3025: 11393 - K11354 cph1 two-component system, chemotaxis family, sensor kinase Cph1, at 123207 to 127605 11393

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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120,859 + -0.1
120,881 - -1.5
120,995 - 0.7
121,004 - 2.3
121,128 + -1.4
121,138 - 0.0
121,148 + -0.2
121,289 - 11392 mRNA_3024 0.13 -0.9
121,296 - 11392 mRNA_3024 0.14 0.2
121,322 + 11392 mRNA_3024 0.15 1.8
121,720 + 11392 mRNA_3024 0.40 0.3
121,786 - 11392 mRNA_3024 0.44 0.1
121,869 - 11392 mRNA_3024 0.49 -0.9
122,020 + 11392 mRNA_3024 0.59 -1.9
122,032 + 11392 mRNA_3024 0.59 0.6
122,133 - 11392 mRNA_3024 0.66 0.6
122,196 + 11392 mRNA_3024 0.70 0.1
122,423 + 11392 mRNA_3024 0.84 -0.7
122,474 + 11392 mRNA_3024 0.87 0.5
122,561 + -2.6
122,615 + 1.4
122,615 + -0.8
122,669 - -1.0
122,902 + 2.2
122,918 - -0.3
122,921 + 1.3
123,047 - -2.3
123,060 - 0.1
123,071 + 0.0
123,072 + 0.0
123,194 - 0.4
123,384 + -1.2
123,385 + -0.7
123,403 + 0.9
123,413 + -0.2