Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3009

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3008: 11376 - HMMPfam-Inositol hexakisphosphate-PF14566,SUPERFAMILY--SSF52799, at 60118 to 65560 11376 mRNA_3009: 11377 - Hypothetical Protein, at 65747 to 66498 11377 mRNA_3010: 11378 - K10398 KIF11, EG5 kinesin family member 11, at 66880 to 69062 11378

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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64,977 + 11376 mRNA_3008 0.89 -0.4
65,134 + -0.7
65,145 + 0.5
65,154 - -0.9
65,160 + -0.2
65,185 + 0.8
65,286 - -0.2
65,300 - 0.4
65,314 + -0.3
65,329 - -0.7
65,408 + 1.2
65,414 - -0.4
65,457 - 0.9
65,466 - -0.6
65,570 + 0.4
65,591 + -2.2
65,595 + -0.3
65,601 + -0.3
65,620 + 0.4
65,727 - -3.9
65,758 + 0.7
65,912 - 11377 mRNA_3009 0.22 0.1
65,913 + 11377 mRNA_3009 0.22 -1.3
65,914 + 11377 mRNA_3009 0.22 -0.4
65,918 + 11377 mRNA_3009 0.23 1.0
65,939 - 11377 mRNA_3009 0.26 -0.5
65,941 + 11377 mRNA_3009 0.26 0.9
66,007 + 11377 mRNA_3009 0.35 -1.1
66,015 - 11377 mRNA_3009 0.36 1.5
66,018 + 11377 mRNA_3009 0.36 0.1
66,033 + 11377 mRNA_3009 0.38 0.7
66,052 - 11377 mRNA_3009 0.41 0.7
66,073 - 11377 mRNA_3009 0.43 0.1
66,077 - 11377 mRNA_3009 0.44 2.5
66,335 - 11377 mRNA_3009 0.78 0.3
66,651 - 2.4
66,782 - -0.7
66,813 + 0.1
66,820 + -0.1
66,821 - 0.1
66,825 - 2.1
66,829 - -0.3
66,834 + -1.8
66,834 - 1.0
66,834 - -0.1
66,835 + -0.6
66,839 - 0.3
66,840 + 3.1
66,841 + -0.6
66,843 + -0.8
66,851 + 0.6
66,852 - -0.1
66,852 - 0.3
66,977 + -0.8
66,981 + -0.6
66,983 + 1.6
66,992 - 1.4
66,993 + -0.0
67,169 + 11378 mRNA_3010 0.13 0.6
67,171 - 11378 mRNA_3010 0.13 -0.2
67,172 - 11378 mRNA_3010 0.13 1.2
67,427 + 11378 mRNA_3010 0.25 -0.0
67,431 + 11378 mRNA_3010 0.25 -1.5