Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3002

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3001: 11369 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 48202 to 49332 11369 mRNA_3002: 11370 - HMMPfam-Fungal specific transcription factor domain-PF11951, at 49376 to 50038 11370 mRNA_3003: 11371 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 50625 to 53414 11371

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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48,381 - 11369 mRNA_3001 0.16 -0.9
48,387 + 11369 mRNA_3001 0.16 0.7
48,388 - 11369 mRNA_3001 0.16 -0.8
48,405 - 11369 mRNA_3001 0.18 0.1
48,405 + 11369 mRNA_3001 0.18 0.5
48,412 + 11369 mRNA_3001 0.19 -0.5
48,414 - 11369 mRNA_3001 0.19 -2.2
48,418 + 11369 mRNA_3001 0.19 -1.3
48,434 + 11369 mRNA_3001 0.21 -0.4
48,489 + 11369 mRNA_3001 0.25 0.6
48,497 - 11369 mRNA_3001 0.26 0.5
48,617 + 11369 mRNA_3001 0.37 0.3
48,686 + 11369 mRNA_3001 0.43 1.7
48,690 - 11369 mRNA_3001 0.43 0.3
48,778 - 11369 mRNA_3001 0.51 -1.4
49,097 - 11369 mRNA_3001 0.79 -0.6
49,150 - 11369 mRNA_3001 0.84 -0.4
49,152 + 11369 mRNA_3001 0.84 -0.7
49,371 + -0.7
49,518 + 11370 mRNA_3002 0.21 -0.1
49,693 - 11370 mRNA_3002 0.48 -0.3
49,694 + 11370 mRNA_3002 0.48 -0.1
49,833 - 11370 mRNA_3002 0.69 0.1
49,942 + 11370 mRNA_3002 0.85 1.4
49,948 + 11370 mRNA_3002 0.86 -1.0
49,951 + 11370 mRNA_3002 0.87 -0.1
49,985 - -0.2
49,992 + 0.1
50,269 - 0.6
50,276 - 0.6
50,569 - 1.0
50,611 - -0.0
50,612 - 0.1
50,612 - 2.1
50,612 - -0.3
50,612 - 1.2
50,640 + 0.5
50,723 + 0.7
50,773 + 1.0
50,931 + 11371 mRNA_3003 0.11 0.4
51,018 - 11371 mRNA_3003 0.14 -1.6
51,026 + 11371 mRNA_3003 0.14 -0.4