Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2975

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2974: 11342 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 690635 to 692698 11342 mRNA_2975: 11343 - KOG3072 Long chain fatty acid elongase, at 693422 to 694637 11343 mRNA_2976: 11344 - KOG2592 Tumor differentially expressed (TDE) protein, at 694917 to 696801 11344

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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692,552 + -2.1
692,830 + 0.9
692,836 + -0.8
692,841 + -1.3
692,850 + 0.7
692,866 - 0.7
692,867 - 1.7
692,919 + 1.4
692,928 + -0.2
692,929 + -0.7
692,929 - -1.6
692,932 + -0.6
692,935 - -1.1
692,937 - -0.9
692,938 + 1.4
692,941 + 1.7
692,942 + 0.5
692,944 + 0.8
692,944 + 2.5
692,948 - 1.3
692,948 + -0.9
692,951 + 1.1
692,952 + -0.6
692,954 + 0.6
692,957 + -0.4
692,964 - 1.4
692,969 - 0.1
692,983 + -0.7
692,999 - -0.5
693,000 + -0.9
693,002 - 0.4
693,006 + 0.8
693,007 + 0.1
693,173 + 1.1
693,191 - 0.2
693,294 - 0.4
693,454 - -1.4
693,479 + 0.9
693,482 + -0.4
693,631 + 11343 mRNA_2975 0.17 -0.5
693,640 + 11343 mRNA_2975 0.18 0.3
693,647 - 11343 mRNA_2975 0.19 -0.4
693,654 - 11343 mRNA_2975 0.19 -0.6
693,655 + 11343 mRNA_2975 0.19 -0.3
693,682 + 11343 mRNA_2975 0.21 -0.1
693,753 + 11343 mRNA_2975 0.27 1.5
693,878 + 11343 mRNA_2975 0.38 -0.6
693,916 + 11343 mRNA_2975 0.41 -2.2
694,167 + 11343 mRNA_2975 0.61 -1.4
694,224 + 11343 mRNA_2975 0.66 -1.9
694,469 - 11343 mRNA_2975 0.86 1.5
694,567 + 0.2
694,615 - 1.1
694,735 + -0.1
694,738 + 1.1
694,813 - 0.6
695,016 - 0.1
695,025 + -0.9
695,041 - 0.0
695,097 + -0.1
695,607 - 11344 mRNA_2976 0.37 0.3
695,618 - 11344 mRNA_2976 0.37 0.3