Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2920

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2919: 11287 - BLAST Protein FAM186A [Mus musculus] [Rhizoctonia solani], at 555842 to 558142 11287 mRNA_2920: 11288 - KOG2234 Predicted UDP-galactose transporter, at 558435 to 560436 11288 mRNA_2921: 11289 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 560845 to 562189 11289

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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557,556 - 11287 mRNA_2919 0.74 0.2
558,003 + -0.0
558,148 + -0.6
558,196 + -0.5
558,299 + 0.4
558,475 - 0.6
558,871 - 11288 mRNA_2920 0.22 0.9
558,898 + 11288 mRNA_2920 0.23 -0.6
558,977 - 11288 mRNA_2920 0.27 2.1
558,984 - 11288 mRNA_2920 0.27 -1.4
559,010 + 11288 mRNA_2920 0.29 -2.6
559,176 - 11288 mRNA_2920 0.37 0.3
559,476 + 11288 mRNA_2920 0.52 -0.7
559,895 + 11288 mRNA_2920 0.73 0.4
560,191 + 11288 mRNA_2920 0.88 0.2
560,339 - -1.3
560,623 - -0.1
560,628 - -0.9
560,657 - 1.0
560,965 + 0.3
560,990 + 11289 mRNA_2921 0.11 -0.3
561,205 + 11289 mRNA_2921 0.27 2.1
561,241 + 11289 mRNA_2921 0.29 -0.9
561,330 - 11289 mRNA_2921 0.36 0.2
561,395 + 11289 mRNA_2921 0.41 2.2