Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2913

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2912: 11280 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 521953 to 523755 11280 mRNA_2913: 11281 - K13703 ABHD11 abhydrolase domain-containing protein 11, at 524044 to 525341 11281

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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523,496 - 11280 mRNA_2912 0.86 1.3
523,618 - 1.8
523,779 - -0.3
524,225 - 11281 mRNA_2913 0.14 -0.7
524,231 - 11281 mRNA_2913 0.14 -0.8
524,608 + 11281 mRNA_2913 0.43 -2.2
524,755 - 11281 mRNA_2913 0.55 -0.4
524,920 - 11281 mRNA_2913 0.67 0.3
525,072 - 11281 mRNA_2913 0.79 0.3
525,076 - 11281 mRNA_2913 0.80 -1.1
525,084 - 11281 mRNA_2913 0.80 0.3
525,109 + 11281 mRNA_2913 0.82 -0.9
525,246 - -0.8
525,377 + 0.5
525,387 - 1.6
525,618 - -1.0
525,627 - 0.5
525,628 - -2.0
525,711 + 0.0
525,770 - -0.0
525,806 - 2.2
525,839 + -3.3
525,840 - -0.3
525,841 + -0.5
525,893 - -0.1
525,903 + 0.5
525,934 - 0.1
525,943 + -0.7
526,072 - -0.3
526,078 - 0.7
526,081 + -1.0
526,084 + 1.0
526,179 + -0.0
526,235 - -1.2
526,247 + -1.1
526,251 + 0.1