Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2889

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2888: 11256 - KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain, at 461121 to 465686 11256 mRNA_2889: 11257 - K08184 SLC16A7 MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 7, at 466050 to 468099 11257 mRNA_2890: 11258 - HMMPfam-Protein of unknown function (DUF2823)-PF11034, at 468371 to 468835 11258

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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465,112 - 11256 mRNA_2888 0.87 -0.1
465,119 + 11256 mRNA_2888 0.88 -0.0
465,129 + 11256 mRNA_2888 0.88 0.5
465,154 - 11256 mRNA_2888 0.88 1.3
465,289 + -0.5
465,571 + -0.7
465,846 - -0.5
465,865 + -0.3
465,933 - -0.2
465,968 - -0.5
465,973 + 2.2
465,982 + -0.4
465,983 - -1.8
465,991 + -1.6
466,133 - -0.2
466,153 - 0.0
466,193 + -0.1
466,270 - 11257 mRNA_2889 0.11 -0.5
466,271 - 11257 mRNA_2889 0.11 0.6
466,284 + 11257 mRNA_2889 0.11 0.6
466,706 + 11257 mRNA_2889 0.32 0.4
466,855 + 11257 mRNA_2889 0.39 -0.4
467,157 - 11257 mRNA_2889 0.54 -1.5
467,667 - 11257 mRNA_2889 0.79 -0.2
467,987 - 0.8
468,062 + -1.0
468,202 - -0.9
468,317 - -1.9
468,350 + -0.1
468,589 + 11258 mRNA_2890 0.47 -0.3
468,825 + -0.9