Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2876

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2875: 11243 - HMMPfam-NMT1/THI5 like-PF09084,SUPERFAMILY--SSF53850, at 420566 to 422079 11243 mRNA_2876: 11244 - K18715 NUP159 nucleoporin NUP159, at 422380 to 429450 11244 mRNA_2877: 11245 - Hypothetical Protein, at 429678 to 431024 11245

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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421,423 - 11243 mRNA_2875 0.57 2.1
421,590 - 11243 mRNA_2875 0.68 0.4
421,591 + 11243 mRNA_2875 0.68 -0.3
421,870 - 11243 mRNA_2875 0.86 1.1
421,899 + 11243 mRNA_2875 0.88 0.3
421,899 + 11243 mRNA_2875 0.88 -0.5
421,903 + 11243 mRNA_2875 0.88 -0.9
422,210 - -2.1
422,315 - 0.3
422,343 - 0.2
428,041 - 11244 mRNA_2876 0.80 -0.5
428,258 - 11244 mRNA_2876 0.83 0.3
428,262 + 11244 mRNA_2876 0.83 4.2
428,485 + 11244 mRNA_2876 0.86 0.0
428,992 - -1.2
429,040 + 0.4
429,065 - 1.6
429,498 + 0.6
429,577 - -0.4
429,599 + -1.0
429,614 - -1.5
429,643 - -0.0
430,046 + 11245 mRNA_2877 0.27 0.4
430,091 - 11245 mRNA_2877 0.31 0.3
430,225 + 11245 mRNA_2877 0.41 3.2
430,330 + 11245 mRNA_2877 0.48 -0.7