Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2870

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2869: 11237 - KOG4170 2-enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/Peroxisomal 3-ketoacyl-CoA-thiolase, sterol-binding domain and related enzymes, at 407863 to 408924 11237 mRNA_2870: 11238 - SUPERFAMILY--SSF64182, at 409148 to 410896 11238 mRNA_2871: 11239 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 411310 to 412108 11239

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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408,442 - 11237 mRNA_2869 0.55 -1.5
408,449 + 11237 mRNA_2869 0.55 -0.4
408,641 + 11237 mRNA_2869 0.73 0.4
408,893 + -1.3
408,899 + 2.5
409,171 + 0.5
409,549 + 11238 mRNA_2870 0.23 -1.3
410,368 - 11238 mRNA_2870 0.70 1.5
410,524 + 11238 mRNA_2870 0.79 -0.4
410,689 + 11238 mRNA_2870 0.88 0.2
410,840 + 1.3
410,920 + 1.2
410,963 + 0.4
410,968 - 0.1
410,971 + -0.9
410,972 - 0.2
410,974 - 0.1
410,974 - -0.4
410,975 + -0.8
411,007 - 0.3
411,007 - 0.8
411,008 - -1.4
411,012 + 0.8
411,015 + 0.3
411,023 + 0.6
411,024 + -0.4
411,025 + -0.0
411,034 + 0.6
411,034 + -0.8
411,035 + -0.5
411,035 + 1.6
411,036 + 1.2
411,039 + -0.5
411,070 + 2.4
411,083 + 0.5
411,083 - -0.1
411,084 + -0.0
411,085 - 0.6
411,087 + -0.3
411,100 - -0.2
411,105 + 0.8
411,108 + -1.1
411,111 + -0.2
411,114 + 1.3
411,117 + 3.0
411,228 + 0.7
411,231 + 0.9
411,234 - 0.8
411,248 + -0.6
411,506 - 11239 mRNA_2871 0.25 1.0
411,531 + 11239 mRNA_2871 0.28 0.7
411,660 - 11239 mRNA_2871 0.44 0.2
411,687 + 11239 mRNA_2871 0.47 0.3
411,692 - 11239 mRNA_2871 0.48 -0.4
411,692 - 11239 mRNA_2871 0.48 -0.4
411,695 + 11239 mRNA_2871 0.48 0.9
411,841 - 11239 mRNA_2871 0.66 -1.0