Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2868

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2867: 11235 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,SUPERFAMILY--SSF52266, at 403264 to 404865 11235 mRNA_2868: 11236 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,SUPERFAMILY--SSF52266, at 405461 to 407348 11236 mRNA_2869: 11237 - KOG4170 2-enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/Peroxisomal 3-ketoacyl-CoA-thiolase, sterol-binding domain and related enzymes, at 407863 to 408924 11237

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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404,502 - 11235 mRNA_2867 0.77 1.5
404,521 - 11235 mRNA_2867 0.78 0.0
404,800 + -0.6
404,829 - 0.1
404,835 + -0.2
404,998 - 0.1
405,001 + -0.3
405,009 - 0.1
405,010 + 0.2
405,020 - -0.4
405,028 + -0.6
405,029 - 0.2
405,049 - 0.6
405,077 - -0.0
405,080 + 0.5
405,130 - -1.5
405,143 - -0.8
405,157 + 0.5
405,162 - 0.7
405,167 + -0.5
405,168 - 1.0
405,186 + 0.2
405,202 + 0.0
405,214 - 0.4
405,229 + 0.7
405,241 - -0.1
405,250 - 0.4
405,262 + 1.2
405,266 + 0.7
405,269 + -0.6
405,274 + -0.2
405,341 + -0.5
405,378 - 2.2
405,383 + -1.0
405,394 + -0.2
405,396 + -0.0
405,936 + 11236 mRNA_2868 0.25 0.7
405,966 + 11236 mRNA_2868 0.27 -2.3
406,227 - 11236 mRNA_2868 0.41 0.7
406,232 + 11236 mRNA_2868 0.41 0.6
406,240 - 11236 mRNA_2868 0.41 -0.9
406,269 + 11236 mRNA_2868 0.43 0.9
406,544 - 11236 mRNA_2868 0.57 -0.9
406,817 + 11236 mRNA_2868 0.72 -0.3
406,837 - 11236 mRNA_2868 0.73 -1.6
406,975 + 11236 mRNA_2868 0.80 -1.4
407,110 - 11236 mRNA_2868 0.87 0.7
407,142 - 11236 mRNA_2868 0.89 0.0
407,248 + -2.1
407,253 + -1.1
407,253 + 0.3
407,254 - -0.8
407,269 + 0.6
407,409 - -0.1
407,419 + 0.3
407,434 + 0.1
407,458 + 0.4
407,480 - -0.4
407,482 - -1.1
407,498 - 1.1
407,505 + -0.9
407,537 - 0.9
407,538 - 1.3
407,546 + 2.5
407,549 - -0.8
407,552 - -0.4
407,552 - -0.2
407,552 - 0.4
407,557 + -0.7
407,558 + -0.1
407,570 - 0.4
407,574 - 0.8
407,693 - 0.8
407,699 - 0.7
407,701 + 0.1
407,715 + -0.2
407,718 + 0.8
407,720 + 1.0
407,736 + -1.0
407,840 - 1.5
407,840 - -0.6
407,844 - -2.3
407,844 - 1.1
407,849 + -1.5
407,859 - 0.3
407,864 + 0.0
407,865 - -0.2
407,868 - 1.3
407,877 - 0.8
408,144 + 11237 mRNA_2869 0.26 -0.0