Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2866

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2865: 11233 - SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717, at 395366 to 397041 11233 mRNA_2866: 11234 - ProSiteProfiles-Myb-like domain profile.-PS50090,SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717,SUPERFAMILY--SSF46689, at 397410 to 402844 11234 mRNA_2867: 11235 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,SUPERFAMILY--SSF52266, at 403264 to 404865 11235

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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396,697 + 11233 mRNA_2865 0.79 -0.6
397,095 + -0.6
397,316 - 0.5
397,472 - 0.1
398,420 - 11234 mRNA_2866 0.19 -0.2
398,551 - 11234 mRNA_2866 0.21 0.2
398,663 + 11234 mRNA_2866 0.23 0.7
398,737 + 11234 mRNA_2866 0.24 1.3
398,860 - 11234 mRNA_2866 0.27 1.5
398,986 - 11234 mRNA_2866 0.29 0.3
399,018 + 11234 mRNA_2866 0.30 0.9
399,273 + 11234 mRNA_2866 0.34 -0.5
399,335 - 11234 mRNA_2866 0.35 1.2
399,432 - 11234 mRNA_2866 0.37 -0.2
399,471 - 11234 mRNA_2866 0.38 -1.7
399,706 - 11234 mRNA_2866 0.42 -0.6
399,876 + 11234 mRNA_2866 0.45 -1.4
399,878 + 11234 mRNA_2866 0.45 -0.1
400,153 - 11234 mRNA_2866 0.50 0.4
400,597 - 11234 mRNA_2866 0.59 -0.2
400,718 - 11234 mRNA_2866 0.61 0.3
400,750 + 11234 mRNA_2866 0.61 0.3
400,752 - 11234 mRNA_2866 0.61 -0.0
400,754 + 11234 mRNA_2866 0.62 -0.6
400,795 - 11234 mRNA_2866 0.62 -0.1
400,806 + 11234 mRNA_2866 0.62 0.9
401,063 - 11234 mRNA_2866 0.67 1.5
401,077 + 11234 mRNA_2866 0.67 1.5
401,455 + 11234 mRNA_2866 0.74 0.4
401,667 - 11234 mRNA_2866 0.78 -0.8
401,815 + 11234 mRNA_2866 0.81 0.4
401,845 + 11234 mRNA_2866 0.82 -0.5
402,206 + 11234 mRNA_2866 0.88 0.3
402,208 - 11234 mRNA_2866 0.88 -0.5
402,238 - 11234 mRNA_2866 0.89 -1.9
402,248 - 11234 mRNA_2866 0.89 -1.2
402,251 + 11234 mRNA_2866 0.89 0.5
402,385 - 0.7
402,389 + 0.4
402,527 + 1.2
402,680 + 2.1
402,973 - -0.2
402,977 + -0.1
403,015 - 1.2
403,389 - 0.7
403,578 + 11235 mRNA_2867 0.20 0.6