Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2858

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2857: 11225 - K11247 SH3GL endophilin-A, at 382503 to 383665 11225 mRNA_2858: 11226 - HMMPfam-Translocon-associated protein (TRAP), alpha subunit-PF03896, at 383912 to 385065 11226 mRNA_2859: 11227 - Hypothetical Protein, at 385402 to 386720 11227

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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382,989 + 11225 mRNA_2857 0.42 0.3
383,066 + 11225 mRNA_2857 0.48 -3.0
383,095 + 11225 mRNA_2857 0.51 0.2
383,264 - 11225 mRNA_2857 0.65 0.8
383,318 + 11225 mRNA_2857 0.70 0.7
383,734 - 1.2
383,741 + 1.1
383,862 + 1.7
383,885 + -2.6
383,890 + -0.7
384,022 - -0.3
384,022 - -0.3
384,160 - 11226 mRNA_2858 0.21 0.8
384,278 - 11226 mRNA_2858 0.32 -0.7
384,290 - 11226 mRNA_2858 0.33 -0.5
384,324 + 11226 mRNA_2858 0.36 0.4
384,599 - 11226 mRNA_2858 0.60 -0.5
384,709 - 11226 mRNA_2858 0.69 -0.6
384,754 + 11226 mRNA_2858 0.73 -0.6
385,032 + 0.0
385,286 - -0.4
385,300 + 1.6
385,755 + 11227 mRNA_2859 0.27 -0.8
386,041 + 11227 mRNA_2859 0.48 0.3