Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2835

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2834: 11202 - K01001 ALG7 UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase, at 324460 to 326344 11202 mRNA_2835: 11203 - K00022 HADH 3-hydroxyacyl-CoA dehydrogenase, at 326503 to 328205 11203 mRNA_2836: 11204 - HMMPfam-Putative zinc finger motif, C2HC5-type-PF06221, at 328530 to 330386 11204

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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326,085 + 11202 mRNA_2834 0.86 -0.7
326,399 + -0.6
326,449 - -0.0
326,453 - 0.0
326,465 + 1.1
326,466 + -0.9
326,597 + -2.0
326,615 + -1.6
326,616 - -0.4
326,753 + 11203 mRNA_2835 0.15 -0.5
326,789 + 11203 mRNA_2835 0.17 -2.5
326,841 + 11203 mRNA_2835 0.20 -1.6
326,907 + 11203 mRNA_2835 0.24 -2.1
327,192 + 11203 mRNA_2835 0.40 -1.3
327,335 - 11203 mRNA_2835 0.49 -1.1
327,760 + 11203 mRNA_2835 0.74 0.6
328,040 - -1.2
328,046 + -1.5
328,210 - 0.3
328,334 - -0.4
328,352 + -0.0
328,355 + -1.5
328,396 + -2.4
328,432 - 0.5
328,477 - 0.1
328,519 + 0.5
328,772 - 11204 mRNA_2836 0.13 -1.8
328,898 - 11204 mRNA_2836 0.20 -0.4
328,911 + 11204 mRNA_2836 0.21 0.6
328,926 - 11204 mRNA_2836 0.21 1.2
329,068 + 11204 mRNA_2836 0.29 0.5