Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2830

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2829: 11197 - Hypothetical Protein, at 313817 to 315093 11197 mRNA_2830: 11198 - BLAST 60S ribosomal protein L33-A [Wallemia ichthyophag..., at 315328 to 317739 11198 mRNA_2831: 11199 - HMMPfam-short chain dehydrogenase-PF00106,PRINTS-Glucose/ribitol dehydrogenase family signature-PR00081,SMART--SM00822,SUPERFAMILY--SSF51735, at 318054 to 319183 11199

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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314,330 + 11197 mRNA_2829 0.40 -0.8
314,438 - 11197 mRNA_2829 0.49 -0.6
314,458 - 11197 mRNA_2829 0.50 -0.0
314,618 - 11197 mRNA_2829 0.63 -1.3
314,618 + 11197 mRNA_2829 0.63 1.0
314,741 - 11197 mRNA_2829 0.72 -0.5
315,031 - -0.7
315,053 + -1.0
315,069 + 1.1
315,618 + 11198 mRNA_2830 0.12 -0.4
315,749 + 11198 mRNA_2830 0.17 -0.1
316,254 + 11198 mRNA_2830 0.38 0.1
316,450 - 11198 mRNA_2830 0.47 0.3
316,490 + 11198 mRNA_2830 0.48 -3.1
316,576 - 11198 mRNA_2830 0.52 -0.5
316,623 + 11198 mRNA_2830 0.54 0.2
316,647 + 11198 mRNA_2830 0.55 1.6
316,833 + 11198 mRNA_2830 0.62 0.3
316,885 + 11198 mRNA_2830 0.65 1.1
317,213 - 11198 mRNA_2830 0.78 2.4
317,493 + 11198 mRNA_2830 0.90 1.2
317,635 + -0.2
318,085 + 0.2
318,275 + 11199 mRNA_2831 0.20 1.0
318,672 + 11199 mRNA_2831 0.55 -0.5