Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2795

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2794: 11162 - BLAST protein FAM72A [Rattus norvegicus], at 230035 to 232978 11162 mRNA_2795: 11163 - SUPERFAMILY--SSF56112, at 233342 to 236388 11163 mRNA_2796: 11164 - K08286 E2.7.11.- protein-serine/threonine kinase, at 236700 to 240335 11164

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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232,485 + 11162 mRNA_2794 0.83 -0.3
232,513 + 11162 mRNA_2794 0.84 -0.3
232,545 + 11162 mRNA_2794 0.85 0.1
232,635 + 11162 mRNA_2794 0.88 0.2
232,635 - 11162 mRNA_2794 0.88 -0.0
232,637 + 11162 mRNA_2794 0.88 -1.0
232,643 - 11162 mRNA_2794 0.89 0.6
232,668 - 11162 mRNA_2794 0.89 3.3
232,673 - 11162 mRNA_2794 0.90 -0.5
232,673 - 11162 mRNA_2794 0.90 -1.4
232,673 - 11162 mRNA_2794 0.90 -0.5
232,674 + 11162 mRNA_2794 0.90 -0.6
232,674 + 11162 mRNA_2794 0.90 0.4
232,674 + 11162 mRNA_2794 0.90 1.2
232,674 + 11162 mRNA_2794 0.90 -1.3
232,684 + -1.0
232,738 + -2.0
232,885 - -1.9
232,905 - -2.7
232,935 - 1.1
232,935 - -0.5
232,953 - -1.6
232,958 + 0.5
233,045 - -0.9
233,077 - 0.5
233,080 + -1.9
233,087 + 0.2
233,091 + 0.4
233,113 - 0.0
233,183 + 0.4
233,239 - 1.6
233,379 - 1.0
233,642 - -0.4
233,772 + 11163 mRNA_2795 0.14 0.7
234,047 - 11163 mRNA_2795 0.23 -0.2
234,075 + 11163 mRNA_2795 0.24 2.0
234,174 - 11163 mRNA_2795 0.27 -1.0
234,254 + 11163 mRNA_2795 0.30 1.2
234,422 + 11163 mRNA_2795 0.35 2.2
234,770 + 11163 mRNA_2795 0.47 0.8
234,857 - 11163 mRNA_2795 0.50 0.3
234,858 + 11163 mRNA_2795 0.50 1.1
234,942 + 11163 mRNA_2795 0.53 -2.5
235,289 + 11163 mRNA_2795 0.64 -1.0
235,418 - 11163 mRNA_2795 0.68 0.9
235,679 - 11163 mRNA_2795 0.77 -0.5
235,693 - 11163 mRNA_2795 0.77 -0.3
235,694 - 11163 mRNA_2795 0.77 -4.3
235,713 + 11163 mRNA_2795 0.78 -5.0
235,775 + 11163 mRNA_2795 0.80 -1.5
235,822 + 11163 mRNA_2795 0.81 1.8
235,860 + 11163 mRNA_2795 0.83 0.1
236,129 + 1.9
236,291 + 1.9
236,302 - 0.6
236,326 + -0.7
236,487 + 2.4
236,589 + 3.3
236,604 + 4.6
236,621 - 0.5