Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2770

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2769: 11137 - K06215 pdxS, pdx1 pyridoxal 5'-phosphate synthase pdxS subunit, at 171565 to 173167 11137 mRNA_2770: 11138 - KOG0400 40S ribosomal protein S13, at 173510 to 175017 11138 mRNA_2771: 11139 - KOG4072 Signal peptidase complex, subunit SPC25, at 175827 to 177001 11139

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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172,514 + 11137 mRNA_2769 0.59 -1.0
172,527 - 11137 mRNA_2769 0.60 0.5
172,530 + 11137 mRNA_2769 0.60 -0.0
172,661 - 11137 mRNA_2769 0.68 -0.3
172,670 - 11137 mRNA_2769 0.69 -3.8
172,702 + 11137 mRNA_2769 0.71 -0.9
172,706 + 11137 mRNA_2769 0.71 -0.6
172,706 - 11137 mRNA_2769 0.71 -1.6
172,722 - 11137 mRNA_2769 0.72 0.4
172,723 + 11137 mRNA_2769 0.72 -1.0
172,790 - 11137 mRNA_2769 0.76 -1.3
172,816 + 11137 mRNA_2769 0.78 -0.9
172,817 - 11137 mRNA_2769 0.78 1.0
172,825 - 11137 mRNA_2769 0.79 3.7
172,827 + 11137 mRNA_2769 0.79 -1.4
172,834 - 11137 mRNA_2769 0.79 0.1
172,899 - 11137 mRNA_2769 0.83 0.1
172,921 - 11137 mRNA_2769 0.85 -1.1
172,969 - 11137 mRNA_2769 0.88 1.0
172,976 - 11137 mRNA_2769 0.88 -0.7
172,978 + 11137 mRNA_2769 0.88 1.3
172,979 + 11137 mRNA_2769 0.88 0.5
173,102 - -0.4
173,198 + -0.8
173,234 - -0.4
173,570 - 0.4
174,062 - 11138 mRNA_2770 0.37 0.4
174,127 + 11138 mRNA_2770 0.41 -0.1
174,165 + 11138 mRNA_2770 0.43 -0.7
174,575 - 11138 mRNA_2770 0.71 -0.2
174,576 - 11138 mRNA_2770 0.71 0.6
174,713 + 11138 mRNA_2770 0.80 1.0
174,870 + -1.7
174,885 - 1.4
175,208 + 0.8
175,595 - -0.8
175,603 + 0.1
175,613 + -2.8
175,733 - 0.7
175,760 - 0.0
175,779 + -0.5
175,795 + -0.7
175,897 - -1.1
175,898 + -0.6
175,909 - 0.0
175,948 + 11139 mRNA_2771 0.10 -1.0
176,015 + 11139 mRNA_2771 0.16 1.2