Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2751

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2750: 11118 - K14962 WDR82, SWD2, CPS35 COMPASS component SWD2, at 134141 to 135893 11118 mRNA_2751: 11119 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 136255 to 137508 11119 mRNA_2752: 11120 - HMMPfam-F-box-like-PF12937, at 138009 to 139329 11120

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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135,366 - 11118 mRNA_2750 0.70 0.6
135,367 + 11118 mRNA_2750 0.70 0.3
135,372 - 11118 mRNA_2750 0.70 1.2
135,637 + 11118 mRNA_2750 0.85 -0.1
135,653 + 11118 mRNA_2750 0.86 0.9
135,653 + 11118 mRNA_2750 0.86 0.8
135,699 - 11118 mRNA_2750 0.89 0.1
135,699 + 11118 mRNA_2750 0.89 0.9
135,824 - -0.9
135,923 + 2.4
135,935 + -0.7
135,949 - -0.5
135,951 - -1.1
135,961 - -0.7
135,961 - -0.1
135,964 + 0.8
135,966 + 2.8
135,978 - 0.4
135,999 + 1.3
136,107 - 2.2
136,117 - -1.4
136,151 - -0.0
136,263 - -0.4
136,264 - 0.7
136,272 + -0.5
136,432 + 11119 mRNA_2751 0.14 -0.6
136,439 + 11119 mRNA_2751 0.15 -1.9
136,661 - 11119 mRNA_2751 0.32 -0.7
136,712 - 11119 mRNA_2751 0.36 -1.6
136,725 + 11119 mRNA_2751 0.37 -0.5
136,738 - 11119 mRNA_2751 0.39 1.2
137,128 - 11119 mRNA_2751 0.70 -0.8
137,393 + 0.6
137,429 - 0.0
137,455 + 0.7
137,554 + 0.0
137,672 - 2.0
137,708 - 0.5
137,716 - -0.3
137,734 + 0.2
137,758 + 1.1
137,883 + -0.5
137,894 - -1.6
138,013 - 0.6
138,021 + 1.6
138,141 - 11120 mRNA_2752 0.10 0.8
138,190 + 11120 mRNA_2752 0.14 2.1
138,337 + 11120 mRNA_2752 0.25 0.1
138,349 + 11120 mRNA_2752 0.26 -0.3
138,463 - 11120 mRNA_2752 0.34 0.1
138,496 + 11120 mRNA_2752 0.37 0.5