Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2678

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2677: 11045 - ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157, at 756988 to 757590 11045 mRNA_2678: 11046 - KOG3102 Uncharacterized conserved protein, at 758219 to 759317 11046 mRNA_2679: 11047 - K14262 DUG2 di- and tripeptidase, at 759389 to 763569 11047

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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757,318 - 11045 mRNA_2677 0.55 1.8
757,325 + 11045 mRNA_2677 0.56 1.5
757,355 - 11045 mRNA_2677 0.61 -0.2
757,424 + 11045 mRNA_2677 0.72 0.6
757,462 - 11045 mRNA_2677 0.79 0.6
757,640 - 1.0
757,737 + 0.7
757,747 - 1.0
757,803 - 1.3
757,880 + -1.4
757,886 - -0.6
757,913 - -2.6
758,065 - -0.9
758,221 - -2.0
758,228 + -1.1
758,229 + -1.0
758,318 - -1.4
758,407 + 11046 mRNA_2678 0.17 -1.3
758,710 - 11046 mRNA_2678 0.45 -1.5
758,793 + 11046 mRNA_2678 0.52 -2.2
759,076 + 11046 mRNA_2678 0.78 -0.3
759,078 - 11046 mRNA_2678 0.78 -1.3
759,176 + 11046 mRNA_2678 0.87 -2.5
759,239 + -1.4
759,241 + -1.4
759,271 + -0.6
759,271 + -0.4
759,383 - 0.1
759,421 + -0.5
759,517 + 0.0
759,811 - 11047 mRNA_2679 0.10 -0.1
759,835 + 11047 mRNA_2679 0.11 -0.5
759,855 + 11047 mRNA_2679 0.11 0.7
759,940 - 11047 mRNA_2679 0.13 -0.3
759,941 + 11047 mRNA_2679 0.13 0.7
760,064 - 11047 mRNA_2679 0.16 -0.1
760,100 - 11047 mRNA_2679 0.17 0.2
760,117 + 11047 mRNA_2679 0.17 -0.8
760,244 + 11047 mRNA_2679 0.20 -1.0