Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2637

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2636: 11004 - K01303 APEH acylaminoacyl-peptidase, at 646481 to 649252 11004 mRNA_2637: 11005 - HMMPfam-Sulphur transport-PF04143,HMMPfam-Domain of unknown function (DUF4341)-PF14241, at 649432 to 650669 11005 mRNA_2638: 11006 - SMART-heat shock factor-SM00415, at 650946 to 653673 11006

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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648,551 - 11004 mRNA_2636 0.75 0.5
648,577 + 11004 mRNA_2636 0.76 -0.1
648,583 - 11004 mRNA_2636 0.76 0.8
648,664 + 11004 mRNA_2636 0.79 1.0
648,710 - 11004 mRNA_2636 0.80 -0.8
648,715 + 11004 mRNA_2636 0.81 0.1
648,995 - -0.3
649,000 - 1.8
649,005 - -0.3
649,031 + -1.4
649,124 - -1.7
649,157 + 0.1
649,157 + -1.8
649,206 + 0.8
649,319 + -0.1
649,335 + 0.7
649,340 + -0.1
649,340 - 1.7
649,342 - -0.9
649,358 + -0.2
649,372 + 1.1
649,384 + -0.6
649,531 + -0.4
649,625 - 11005 mRNA_2637 0.16 0.5
649,629 + 11005 mRNA_2637 0.16 0.7
649,756 - 11005 mRNA_2637 0.26 2.0
649,777 - 11005 mRNA_2637 0.28 -0.9
649,781 + 11005 mRNA_2637 0.28 0.9
649,786 + 11005 mRNA_2637 0.29 -0.7
649,794 + 11005 mRNA_2637 0.29 0.7
649,951 - 11005 mRNA_2637 0.42 -0.4
650,041 - 11005 mRNA_2637 0.49 -1.4
650,060 - 11005 mRNA_2637 0.51 1.6
650,181 - 11005 mRNA_2637 0.61 -1.2
650,228 - 11005 mRNA_2637 0.64 0.7
650,301 + 11005 mRNA_2637 0.70 -1.0
650,561 - -1.5
650,687 + 0.0
650,963 + 1.2
651,109 - -0.2
651,109 + -0.9
651,243 - 11006 mRNA_2638 0.11 1.8
651,295 - 11006 mRNA_2638 0.13 1.6
651,403 - 11006 mRNA_2638 0.17 -0.2
651,403 - 11006 mRNA_2638 0.17 0.4