Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2601

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2600: 10968 - HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839, at 568894 to 570450 10968 mRNA_2601: 10969 - Hypothetical Protein, at 570670 to 572190 10969 mRNA_2602: 10970 - HMMPfam-Glycosyltransferase family 10 (fucosyltransferase)-PF00852,SUPERFAMILY--SSF53756, at 572350 to 572862 10970

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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569,730 - 10968 mRNA_2600 0.54 1.6
569,747 + 10968 mRNA_2600 0.55 -1.8
570,162 + 10968 mRNA_2600 0.81 -0.1
570,188 - 10968 mRNA_2600 0.83 -0.9
570,465 - -0.3
570,472 - 0.6
570,552 + 0.5
570,598 - -0.3
570,626 + -0.8
570,777 - 0.2
570,914 - 10969 mRNA_2601 0.16 -1.4
570,917 + 10969 mRNA_2601 0.16 0.5
570,919 - 10969 mRNA_2601 0.16 0.2
570,926 + 10969 mRNA_2601 0.17 1.2
571,048 + 10969 mRNA_2601 0.25 0.7
571,058 + 10969 mRNA_2601 0.26 0.2
571,070 + 10969 mRNA_2601 0.26 1.4
571,197 - 10969 mRNA_2601 0.35 -1.3
571,219 + 10969 mRNA_2601 0.36 -0.0
571,477 - 10969 mRNA_2601 0.53 -1.6
571,493 - 10969 mRNA_2601 0.54 0.7
571,504 + 10969 mRNA_2601 0.55 -0.2
571,545 + 10969 mRNA_2601 0.58 0.1
571,752 + 10969 mRNA_2601 0.71 -0.1
571,938 + 10969 mRNA_2601 0.83 0.2
571,946 + 10969 mRNA_2601 0.84 -0.3
572,063 - 0.8
572,078 + -1.6
572,503 + 10970 mRNA_2602 0.30 0.2
572,505 + 10970 mRNA_2602 0.30 0.4
572,552 + 10970 mRNA_2602 0.39 0.1
572,573 + 10970 mRNA_2602 0.43 -0.5
572,746 - 10970 mRNA_2602 0.77 1.5
572,759 + 10970 mRNA_2602 0.80 1.1
572,841 - -0.2
573,081 - -0.1
573,107 + -0.6