Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2591

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2590: 10958 - Hypothetical Protein, at 549148 to 549789 10958 mRNA_2591: 10959 - Hypothetical Protein, at 550194 to 551919 10959 mRNA_2592: 10960 - HMMPfam-Protein of unknown function (DUF1762)-PF08574, at 551978 to 553842 10960

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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549,225 - 10958 mRNA_2590 0.12 0.2
549,239 + 10958 mRNA_2590 0.14 -2.1
549,287 + 10958 mRNA_2590 0.22 0.6
549,299 + 10958 mRNA_2590 0.24 0.4
549,349 + 10958 mRNA_2590 0.31 1.1
549,352 + 10958 mRNA_2590 0.32 0.5
549,360 + 10958 mRNA_2590 0.33 0.1
549,365 - 10958 mRNA_2590 0.34 0.1
549,370 + 10958 mRNA_2590 0.35 -1.7
549,373 + 10958 mRNA_2590 0.35 0.7
549,374 + 10958 mRNA_2590 0.35 -0.3
549,375 - 10958 mRNA_2590 0.35 0.8
549,378 - 10958 mRNA_2590 0.36 0.1
549,382 + 10958 mRNA_2590 0.36 -1.1
549,383 + 10958 mRNA_2590 0.37 -0.9
549,385 - 10958 mRNA_2590 0.37 0.5
549,386 + 10958 mRNA_2590 0.37 0.6
549,391 + 10958 mRNA_2590 0.38 0.5
549,398 - 10958 mRNA_2590 0.39 -0.3
549,400 + 10958 mRNA_2590 0.39 0.3
549,402 - 10958 mRNA_2590 0.40 1.5
549,406 + 10958 mRNA_2590 0.40 2.3
549,412 + 10958 mRNA_2590 0.41 1.0
549,412 + 10958 mRNA_2590 0.41 1.1
549,414 + 10958 mRNA_2590 0.41 1.7
549,422 + 10958 mRNA_2590 0.43 -0.4
549,429 - 10958 mRNA_2590 0.44 -0.4
549,435 + 10958 mRNA_2590 0.45 0.0
549,435 + 10958 mRNA_2590 0.45 -0.8
549,437 + 10958 mRNA_2590 0.45 0.3
549,439 - 10958 mRNA_2590 0.45 0.2
549,441 - 10958 mRNA_2590 0.46 1.1
549,442 + 10958 mRNA_2590 0.46 -0.2
549,443 - 10958 mRNA_2590 0.46 0.2
549,447 + 10958 mRNA_2590 0.47 -0.9
549,448 + 10958 mRNA_2590 0.47 0.5
549,448 - 10958 mRNA_2590 0.47 0.4
549,449 + 10958 mRNA_2590 0.47 -0.2
549,449 - 10958 mRNA_2590 0.47 -0.6
549,461 + 10958 mRNA_2590 0.49 -0.2
549,469 + 10958 mRNA_2590 0.50 1.5
549,469 + 10958 mRNA_2590 0.50 -0.0
549,470 + 10958 mRNA_2590 0.50 2.0
549,478 + 10958 mRNA_2590 0.51 -0.1
549,479 + 10958 mRNA_2590 0.52 0.8
549,490 + 10958 mRNA_2590 0.53 -0.3
549,508 - 10958 mRNA_2590 0.56 0.2
549,517 - 10958 mRNA_2590 0.57 0.5
549,533 + 10958 mRNA_2590 0.60 -0.0
549,543 + 10958 mRNA_2590 0.62 -0.7
549,555 + 10958 mRNA_2590 0.63 0.2
549,574 - 10958 mRNA_2590 0.66 2.1
549,574 - 10958 mRNA_2590 0.66 -0.5
549,575 + 10958 mRNA_2590 0.67 1.7
549,577 - 10958 mRNA_2590 0.67 0.3
549,578 - 10958 mRNA_2590 0.67 -0.2
549,581 - 10958 mRNA_2590 0.67 -2.6
549,583 - 10958 mRNA_2590 0.68 0.8
549,587 - 10958 mRNA_2590 0.68 -0.6
549,588 + 10958 mRNA_2590 0.69 0.1
549,593 - 10958 mRNA_2590 0.69 0.1
549,593 + 10958 mRNA_2590 0.69 0.3
549,594 - 10958 mRNA_2590 0.69 -0.1
549,595 - 10958 mRNA_2590 0.70 0.3
549,596 + 10958 mRNA_2590 0.70 0.3
549,600 + 10958 mRNA_2590 0.70 -0.9
549,600 + 10958 mRNA_2590 0.70 0.7
549,605 - 10958 mRNA_2590 0.71 -0.1
549,606 + 10958 mRNA_2590 0.71 0.6
549,607 + 10958 mRNA_2590 0.71 0.1
549,612 + 10958 mRNA_2590 0.72 -1.2
549,614 + 10958 mRNA_2590 0.73 1.2
549,629 - 10958 mRNA_2590 0.75 -0.5
549,632 + 10958 mRNA_2590 0.75 -0.7
549,639 + 10958 mRNA_2590 0.76 -0.2
549,640 - 10958 mRNA_2590 0.77 0.9
549,649 + 10958 mRNA_2590 0.78 -0.2
549,651 - 10958 mRNA_2590 0.78 0.1
549,654 - 10958 mRNA_2590 0.79 1.1
549,655 + 10958 mRNA_2590 0.79 -0.2
549,656 + 10958 mRNA_2590 0.79 -0.6
549,657 + 10958 mRNA_2590 0.79 0.1
549,661 + 10958 mRNA_2590 0.80 -0.8
549,661 - 10958 mRNA_2590 0.80 -1.0
549,665 - 10958 mRNA_2590 0.81 -0.1
549,665 - 10958 mRNA_2590 0.81 0.4
549,668 - 10958 mRNA_2590 0.81 -0.7
549,669 + 10958 mRNA_2590 0.81 0.4
549,675 - 10958 mRNA_2590 0.82 1.0
549,677 - 10958 mRNA_2590 0.82 0.3
549,678 - 10958 mRNA_2590 0.83 2.2
549,680 + 10958 mRNA_2590 0.83 -3.3
549,685 + 10958 mRNA_2590 0.84 0.3
549,685 + 10958 mRNA_2590 0.84 1.3
549,691 + 10958 mRNA_2590 0.85 0.1
549,704 - 10958 mRNA_2590 0.87 -0.3
549,706 + 10958 mRNA_2590 0.87 -0.4
549,710 - 10958 mRNA_2590 0.88 -0.4
549,715 - 10958 mRNA_2590 0.88 0.5
549,716 + 10958 mRNA_2590 0.88 0.1
549,761 + 0.2
549,818 - 2.1
549,819 + -0.6
549,821 - 0.7
549,825 - 0.3
549,829 + 0.8
549,830 - -0.8
549,837 + -0.2
549,841 + 1.0
549,846 + 0.2
549,849 - 0.6
549,850 + -0.2
549,859 + -0.4
549,885 - 0.4
549,894 + -1.6
549,957 - 0.3
550,012 + -0.9
550,020 - -0.4
550,033 - -0.7
550,033 + 1.6
550,034 + -1.1
550,290 - -4.0
550,316 - -0.3
550,323 - 1.0
550,324 - 0.2
550,440 - 10959 mRNA_2591 0.14 2.0
550,470 + 10959 mRNA_2591 0.16 0.8
550,614 - 10959 mRNA_2591 0.24 -0.7
551,028 - 10959 mRNA_2591 0.48 0.9
551,030 + 10959 mRNA_2591 0.48 -0.3
551,042 + 10959 mRNA_2591 0.49 -0.9
551,174 - 10959 mRNA_2591 0.57 -0.3
551,181 - 10959 mRNA_2591 0.57 0.1
551,186 + 10959 mRNA_2591 0.57 1.4
551,649 + 10959 mRNA_2591 0.84 0.3
551,705 + 10959 mRNA_2591 0.88 -0.0
551,797 - -1.2
551,979 + -1.8