Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2585

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2584: 10952 - K12350 SMPD1, ASM sphingomyelin phosphodiesterase, at 499644 to 502553 10952 mRNA_2585: 10953 - K18167 SDHAF1 succinate dehydrogenase assembly factor 1, at 503292 to 503677 10953 mRNA_2586: 10954 - K05765 CFL cofilin, at 503771 to 504788 10954

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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502,309 - -0.8
502,316 + 0.4
502,317 + -1.2
502,379 + 0.2
502,392 - -0.5
502,460 + -0.1
502,559 + 1.9
502,662 - -0.0
502,722 + 2.0
502,840 - 1.0
502,840 - -1.0
502,840 - 1.6
502,844 - 0.6
503,258 - 0.2
503,276 + -0.6
503,402 - 10953 mRNA_2585 0.28 0.9
503,418 + 10953 mRNA_2585 0.33 1.9
503,691 - -1.5
503,696 - -0.1