Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2583

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2581: 10949 - K06096 VAPA vesicle-associated membrane protein-associated protein A, at 492942 to 494422 10949 mRNA_2582: 10950 - HMMPfam-Ribosomal protein L35-PF01632,PRINTS-Ribosomal protein L35 signature-PR00064,ProSitePatterns-Ribosomal protein L35 signature.-PS00936,SUPERFAMILY--SSF143034, at 494471 to 495097 10950 mRNA_2583: 10951 - K10610 DDB1 DNA damage-binding protein 1, at 495200 to 499404 10951 mRNA_2584: 10952 - K12350 SMPD1, ASM sphingomyelin phosphodiesterase, at 499644 to 502553 10952

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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494,201 + 10949 mRNA_2581 0.85 -1.2
494,232 + 10949 mRNA_2581 0.87 0.2
494,321 - 0.3
494,326 - -0.5
494,479 - -1.5
494,633 + 10950 mRNA_2582 0.26 -0.4
494,638 - 10950 mRNA_2582 0.27 -1.9
494,651 - 10950 mRNA_2582 0.29 -1.1
494,654 + 10950 mRNA_2582 0.29 -0.6
494,675 - 10950 mRNA_2582 0.33 -1.4
494,680 + 10950 mRNA_2582 0.33 -2.6
494,765 - 10950 mRNA_2582 0.47 -1.2
494,769 - 10950 mRNA_2582 0.48 -1.1
494,887 - 10950 mRNA_2582 0.66 -2.2
494,926 + 10950 mRNA_2582 0.73 -1.3
494,937 + 10950 mRNA_2582 0.74 0.3
494,952 - 10950 mRNA_2582 0.77 -1.6
495,085 + -0.5
495,119 - -0.8
495,263 + 0.2
495,401 + -2.6
495,972 - 10951 mRNA_2583 0.18 -1.1
496,188 + 10951 mRNA_2583 0.23 -0.8
496,345 - 10951 mRNA_2583 0.27 -1.1
496,363 - 10951 mRNA_2583 0.28 -0.4
496,372 - 10951 mRNA_2583 0.28 -0.8
496,401 + 10951 mRNA_2583 0.29 -0.2
496,778 + 10951 mRNA_2583 0.38 -0.6
496,901 + 10951 mRNA_2583 0.40 -0.8
496,925 + 10951 mRNA_2583 0.41 -0.7
496,951 + 10951 mRNA_2583 0.42 -1.3
497,102 + 10951 mRNA_2583 0.45 1.8
497,136 + 10951 mRNA_2583 0.46 -1.3
497,613 - 10951 mRNA_2583 0.57 -1.1
497,676 - 10951 mRNA_2583 0.59 -0.7
497,843 - 10951 mRNA_2583 0.63 -1.2
497,878 + 10951 mRNA_2583 0.64 -1.0
497,994 - 10951 mRNA_2583 0.66 -1.4
498,017 + 10951 mRNA_2583 0.67 -0.1
498,536 - 10951 mRNA_2583 0.79 1.6
498,861 - 10951 mRNA_2583 0.87 -2.4
498,918 + 10951 mRNA_2583 0.88 -0.1
499,013 + -0.3
499,320 + -1.2
499,323 - -0.6
499,471 + -0.2
499,479 - -0.2
499,635 - 1.7
499,639 + -2.2
499,751 - -0.2
499,757 - 0.7
499,760 - 0.2
499,773 - 0.5
499,778 + 1.7
499,778 + 0.7
499,885 - 1.5
499,942 - 10952 mRNA_2584 0.10 0.1
500,074 + 10952 mRNA_2584 0.15 0.4
500,203 - 10952 mRNA_2584 0.19 0.9
500,212 - 10952 mRNA_2584 0.20 1.1
500,227 + 10952 mRNA_2584 0.20 -0.0
500,252 + 10952 mRNA_2584 0.21 0.8
500,322 + 10952 mRNA_2584 0.23 -1.4
500,329 - 10952 mRNA_2584 0.24 0.3
500,384 + 10952 mRNA_2584 0.25 0.7
500,397 - 10952 mRNA_2584 0.26 1.0
500,402 - 10952 mRNA_2584 0.26 -0.0