Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2578

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2577: 10945 - HMMPfam-Protein of unknown function (DUF3767)-PF12597, at 482367 to 483175 10945 mRNA_2578: 10946 - KOG3574 Acetyl-CoA transporter, at 483636 to 486060 10946 mRNA_2579: 10947 - K10597 UBE4B, UFD2 ubiquitin conjugation factor E4 B, at 486195 to 490612 10947

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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483,222 + -0.8
483,389 - 0.5
483,527 + -0.1
483,629 + -1.1
483,887 - 10946 mRNA_2578 0.10 2.2
484,079 - 10946 mRNA_2578 0.18 0.5
484,120 - 10946 mRNA_2578 0.20 2.8
484,390 + 10946 mRNA_2578 0.31 0.9
484,439 - 10946 mRNA_2578 0.33 0.1
484,508 + 10946 mRNA_2578 0.36 -0.2
484,538 - 10946 mRNA_2578 0.37 1.4
484,539 + 10946 mRNA_2578 0.37 1.1
484,553 + 10946 mRNA_2578 0.38 0.8
484,662 + 10946 mRNA_2578 0.42 -1.5
484,712 + 10946 mRNA_2578 0.44 1.4
484,834 - 10946 mRNA_2578 0.49 1.2
485,052 - 10946 mRNA_2578 0.58 -0.3
485,097 + 10946 mRNA_2578 0.60 1.9
485,097 + 10946 mRNA_2578 0.60 0.7
485,834 + 0.5
485,845 + 0.4
485,862 - -0.5
485,987 - 0.7
485,992 + 0.5
486,000 + 0.2
486,000 + 1.5
486,117 - 0.2
486,121 + 0.2
486,124 - 1.0
486,151 - 0.4
486,194 - -1.2
486,431 - -1.0
486,604 + -2.4
486,693 + 10947 mRNA_2579 0.11 0.5
486,765 + 10947 mRNA_2579 0.13 -1.1
487,035 - 10947 mRNA_2579 0.19 -1.3